Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01842 ATGGCTAACATGGTATTTGTTGGTGTTAAGGTTGCTGCTGTTTCTCTACCACCATTACCCATTACAAGCAAAAATCTCACTTTCAGTTTCACCCATAAGAAACACTTCCTTCTTCTGAATTGCTCCCAAACCAATAACAGAACAACCTCTTTCTCTTCGTCCTTCTCATTCTCATCACCACCCCTCACAAACAAGGGTGGTTGTTGTGTGTTGGGTTGTCTCCCTCCAGCTTCGTCTGAATCCTCAACGTCATCATCTTCCACTGCTAAGCCCTCTTCCCCTTTCCCTTCAACTAAGCTTTATGTCAGTGGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCACGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAATTGCCAAACCGAGATCAGAGCTACCACAGCGGCACAGGGAAGGCACAAGATTGTAA 573 0.4346 MANMVFVGVKVAAVSLPPLPITSKNLTFSFTHKKHFLLLNCSQTNNRTTSFSSSFSFSSPPLTNKGGCCVLGCLPPASSESSTSSSSTAKPSSPFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELPQRHREGTRL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01842 190 Gene3D - 76 189 IPR012677 -
Phac4g01842 190 SMART rrm1_1 99 172 IPR000504 GO:0003723
Phac4g01842 190 PANTHER NUCLEOLAR PROTEIN 8 84 185 - -
Phac4g01842 190 SUPERFAMILY RNA-binding domain, RBD 88 185 IPR035979 GO:0003676
Phac4g01842 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Phac4g01842 190 FunFam Organelle RRM domain-containing protein 6, chloroplastic 82 189 - -
Phac4g01842 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01842 Phac-Chr4 45534410 45537358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01842 98 179 Eukaryotic Initiation Factors Gene Family AT4G34110 29.268 3.96e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01842 - K13195 gmx:100305561 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac4g01842 4 45534410 45537358 Phac4g01842 4 45534410 45537358 ECH