LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g01806	ATGGCAACTACAACTTCCCATGGATTCACCTATGATGTGTTCCTGAGCTTTAGAGGGGAAGACACGCGTTATGGTTTCACTGCCAATCTCTTCAAAGCTCTTTGTGACAAGGGAATTCACACTTTCTTTGATGATGACAAACTTGAAAGCGGAGAAGAAATAACAGCAACACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATAGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTTTGCTTGGATGAACTCGCTACCATCCTTCACTGCAAGACTAAAGGCCTCTTGGTTATACCCGTCTTTTATAAGGTCGATCCTTCTCATGTAAGACATCAGAAAGGTAGCTATGGAGAAGCACTGGCTAAGCATCAAAAGAGGTTCAAATCCAAGAAGGAAAAGCTGCAGAAATGGAAGGTGGCTCTGCGTCAAGTTGCTGACTTATCTGGCTATCATTTTAAAGATGGAGATGAATACCAGCACAACTTTATTGGGAGAATTGTTGAACGGGTTTCTAGGGTGATTAATCGTGCTCCTTTACATGTTGCGGATCACCCAGTTGGCCTACTGTCGCAAGTGCAAGAGGTGAAGAAACTTTTGGATGTTGGATCTGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGAGGGATAGGAAAAACTACACTTGCTCTAGAAGCGTATAATTTGATTGCTAATGATTTTGATGGCTCATGTTTTCTTCAAAATGTTAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGAGTCTCATTCTTTCCGAAATACTTGGAGAGAAGAACATCAACTTAGCAAGTGTGCAACGAGGAATTTCAGTGATACAACAAAGGCTTCGTAGGAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAATCGAAAGCAGTTACAAGCATTTGCTGGAAGATCCGATTGGTTTGGTCCTGGGAGCAGAGTTATCATTACCACTAGGGACGAACAACTACTAAAATCTCATGAGGTTGGAAGAACTTATGAGATGGAGGAATTGAACGAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAGTTTTCATCCAAGTTTCGAGGATGTCTTGAAAAGTGTAGCAACTTCTGCTTCTGGTCTCCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTGGAGGAATGGGAGTCTGCTATTGAACATTACAAAAGAATTCCTAATGGTGAAATCCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAAGAAAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGAAGTAATCTGACAGAAGTTGAACATATACTTGGTGTTCTTTATGATAACAACATGAAACATCATGTTGGGGTGTTGGTAGAAAAATCTCTCATAAAGGTTTGGCCTAGAAGGCGTATTGAAATGCACGACTTGATTGAGGACATGGGTAGGCAAATTGACCAGCAAGAGTCACCCAAAGAGCCAGGGAAACACAGGAGATTATGGTTACCTAAAGATATCATTCATGTTTTAAAACACAACACATGCAAATTTTTAACACAAATACCTAATATGTCTGGTCTCCCAAATTTGGAGGAAGTTTCATTTAAAAAGTGTCAGAGTTTAGTTGTAGTTCACGACTCAATTGGTTTTATGACTAAACTGAAAATATTGAATGCGGAAGGTTGCAGCAAGCTTTTGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAGTCTAAAACTTTCATATTGTTCGAATCTAAAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACGTAAAGGTACTTCAATTGGATAATCTTCCCATAATAGAATTTCCAGTTTCGTTTCAAAACCTTATTCGACTCACACATTTATCCATGTCATGTGAAATTGTTCACTTACCAAGTAGCATTGTCATGATGCGTGAGTTGTTGGTTATTGAAGTTATTAATTGCAAGGAGTGGCGATGGGTAAAATTCGAGGAGGGTGAAGATAACATAGGCTCAATGCTTTCTTCAAAGGTAGATTGGTTTTTGGCCTCGTCTTGCAACTTTGATGATCATTTCTTCTCAGCAGGTTTCATGCAATTGGCACAAGTGCGTAGTTTACATTTAAGGGAAAATAACTTCAAATTCCTTCCTGAATGCATCAAAGAATTTCACAACCTCGAATCACTTAATGTGAGTAATTGCAAGCATCTTCAAGAAATTAGAGGGATTCCACCAAATTTAAAGCATTTCAAGGCAGTAAACTGTATATCATTGAGTTCCTCGAGCTCAAGCATGTTGCTGAATAAGCAACTGCACGAGGCTGGAAAAACTGAATTCTGGTTTCCAGGAACAAGTATTCCAGAGTGGTTTGATCAACAAAGCAGTGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAAAGTTCTTTCTTTTCTTATTGCACCTGTGTGTGATGAGTTACGTTTCATTAGACCTATGGTGTTCATTGATGGCAAAGTTCAAGAATCAATATTCTTTTATTCCAAGGAACTAAAGAAGAAGTTTGAATTGGATCACACATTCCTCTTTGATCTACAAGCGCCACATGTTTGTGGTAATTTTTTTAAAGTACCTGTAGGAAAGGAATGGAAGCATGTCGAGGTTACATATGAAGGTGTGATAGAGACCTCAATTATTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACAACATCATGGAGGATATTCGGTTTGATGATCCTTATAGTAACAAGAATGTAGACAAAGATCTAAATGTTTCTCAATCACAAAACCATTCCTTGTTACAAAGCATAGAGTGGTTTGATCACCTAAGCAGTGAACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCTTGCCAAAGTTCTTTCTCTTCTTATTGCACCTGTGGATGTTGAATATGAGTTTGATTTCATTAGAACTATGGTGTTCATTGATAGCAAAGTTCAAGAATCAATATTATTTTCTTCCAAGGAAATAGGGAGGATGTTTGAATTGGATCAAACATTCTTCTTTGATCTACAAGTGCTACCTGTGTATGGTAATTTGTTCGAACTAGCTTTACGAAAGGAATGGAAGCATGTGGAGGTTACATATGAAGGTGTGATAGAGACCTCAATTATTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACAACATCATGAAGGACATTCGGTTTGGTGATCCTTATAGCAACAATAAAGTAGACAAAGATCTAAATGCTTCTCAATGA	3300	0.3818	MATTTSHGFTYDVFLSFRGEDTRYGFTANLFKALCDKGIHTFFDDDKLESGEEITATLVKAIEESRIAIVVLSHNYASSSFCLDELATILHCKTKGLLVIPVFYKVDPSHVRHQKGSYGEALAKHQKRFKSKKEKLQKWKVALRQVADLSGYHFKDGDEYQHNFIGRIVERVSRVINRAPLHVADHPVGLLSQVQEVKKLLDVGSDDVVHMIGIHGMGGIGKTTLALEAYNLIANDFDGSCFLQNVREESNKHGLKHLQSLILSEILGEKNINLASVQRGISVIQQRLRRKKVLLILDDVDNRKQLQAFAGRSDWFGPGSRVIITTRDEQLLKSHEVGRTYEMEELNENDSLQLLIWNAFKRESFHPSFEDVLKSVATSASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGEILEILKVSFDALGEEEKSVFLDIACCFKGSNLTEVEHILGVLYDNNMKHHVGVLVEKSLIKVWPRRRIEMHDLIEDMGRQIDQQESPKEPGKHRRLWLPKDIIHVLKHNTCKFLTQIPNMSGLPNLEEVSFKKCQSLVVVHDSIGFMTKLKILNAEGCSKLLSFPPLNLPTLESLKLSYCSNLKKFPEILGKMGNVKVLQLDNLPIIEFPVSFQNLIRLTHLSMSCEIVHLPSSIVMMRELLVIEVINCKEWRWVKFEEGEDNIGSMLSSKVDWFLASSCNFDDHFFSAGFMQLAQVRSLHLRENNFKFLPECIKEFHNLESLNVSNCKHLQEIRGIPPNLKHFKAVNCISLSSSSSSMLLNKQLHEAGKTEFWFPGTSIPEWFDQQSSGPSSSFWFRNKFPAKVLSFLIAPVCDELRFIRPMVFIDGKVQESIFFYSKELKKKFELDHTFLFDLQAPHVCGNFFKVPVGKEWKHVEVTYEGVIETSIIKATGIHVFKEENNIMEDIRFDDPYSNKNVDKDLNVSQSQNHSLLQSIEWFDHLSSEPSCSFWFRNKFLAKVLSLLIAPVDVEYEFDFIRTMVFIDSKVQESILFSSKEIGRMFELDQTFFFDLQVLPVYGNLFELALRKEWKHVEVTYEGVIETSIIKATGIHVFKEENNIMKDIRFGDPYSNNKVDKDLNASQ*	1100

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac4g01806	1099	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	522	IPR044974	GO:0006952
	Phac4g01806	1099	SUPERFAMILY	"Winged helix" DNA-binding domain	416	523	IPR036390	-
	Phac4g01806	1099	PRINTS	Disease resistance protein signature	583	599	-	-
	Phac4g01806	1099	PRINTS	Disease resistance protein signature	380	394	-	-
	Phac4g01806	1099	PRINTS	Disease resistance protein signature	287	301	-	-
	Phac4g01806	1099	PRINTS	Disease resistance protein signature	211	226	-	-
	Phac4g01806	1099	Gene3D	Ribonuclease Inhibitor	602	786	IPR032675	-
	Phac4g01806	1099	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	178	-	-
	Phac4g01806	1099	SMART	till_3	10	149	IPR000157	GO:0007165
	Phac4g01806	1099	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	152	IPR035897	-
	Phac4g01806	1099	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	439	IPR027417	-
	Phac4g01806	1099	SUPERFAMILY	L domain-like	485	776	-	-
	Phac4g01806	1099	ProSiteProfiles	TIR domain profile.	9	176	IPR000157	GO:0007165
	Phac4g01806	1099	Gene3D	-	177	338	IPR027417	-
	Phac4g01806	1099	Gene3D	-	9	176	IPR035897	-
	Phac4g01806	1099	Pfam	NB-ARC domain	193	411	IPR002182	GO:0043531
	Phac4g01806	1099	Gene3D	Ribonuclease Inhibitor	519	601	IPR032675	-
	Phac4g01806	1099	Gene3D	-	345	429	IPR042197	-
	Phac4g01806	1099	Pfam	TIR domain	11	173	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g01806	Phac-Chr4	45140012	45151228	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g01806	514	632	WRKY Transcription Factor Family	AT5G45050	34.167	7.74e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g01806	-		-	vra:106764825	1036.17