Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01803 ATGTCTTCTGCCGGCGGCGACGGTACGTCCGGTGAGCCTCGCCAATACTTCTGCCACCAGTGCAATCGCACCGTCTCGGTTACCCCTTCCCCCTCCTCCGATCTCCTCTGCCCCGATTGCAACAGCGGTTTCCTCGAAGAACTCGAAATCCCTATCCCTAACCCTAACCCTACCCCGTCCAATCCTTTCTTCCCTGACTTCCCTCTCGCTGGGGCCACCGCCATTCCCTTCGTCTTCCCAGGAGGAGCCGGCCAGCCCTTTGACGATTTCTCCACGCTCTCTGGCATTCGATCTGACGCCGCCACCGCCGATACTGCCCTCGCCCCCTTTGTCCTCCTCCAGAACTACTTACAAACGCTGAGAGCCGGTGGCGGCGGCGGCAACCTTCAACTTGTGATTGAGTCCGGCGACCCCGGCGGAGCGTTCCGGTTTCCCGGAATCACCCACGGCGACTACTTCTTCGGGACGGGCCTTGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCGAACCGCTATGGCACCCCCCCGGCTTCTAAGACGGCCGTCGAGGGGCTGCCGGACGTCTCGGTCACCGAGGAGCTGCTTGCATCGGATTCCTCACAATGCGCAGTGTGTAAAGACACGTTTGAACTCGGTGAAACCGCGAAGCAGATGCCCTGTAAGCATATATATCACGCGGACTGCATTTTGCCTTGGTTGGAAATGCATAATTCCTGTCCAGTTTGTCGGTATGAGCTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCAACGTGGTAGCGGTGGTACCGGCAGTGGGGTGGCTCCCCAGGTGAATTGGAACCTGGCTGTGGGGCCTGGTGGTTCTGCGGATTCGTCTGGTGGCGGAGACAATTCGCAGCGGAGGAGGTTTAGGGTGTCTTCATTGTGGCCCTTCAGGCAATCTGTTTCTTCTGGTGCTGAGACAAGTAATGTTGGCGGTGCCAACAATGATGATAACAATAATGTCAATAGTGGGGAAAGCAATAGTGGGCAATCGAATTCTGGAAATAGTGGGCAATCGAATTCTGGAAATAGGGGGAATCAGAATTTTGAGTCGGAGACCAGACAGGAAGATCTAGATTGA 1110 0.5658 MSSAGGDGTSGEPRQYFCHQCNRTVSVTPSPSSDLLCPDCNSGFLEELEIPIPNPNPTPSNPFFPDFPLAGATAIPFVFPGGAGQPFDDFSTLSGIRSDAATADTALAPFVLLQNYLQTLRAGGGGGNLQLVIESGDPGGAFRFPGITHGDYFFGTGLEELIQHLAENDPNRYGTPPASKTAVEGLPDVSVTEELLASDSSQCAVCKDTFELGETAKQMPCKHIYHADCILPWLEMHNSCPVCRYELPTDDPDYEQRAQRGSGGTGSGVAPQVNWNLAVGPGGSADSSGGGDNSQRRRFRVSSLWPFRQSVSSGAETSNVGGANNDDNNNVNSGESNSGQSNSGNSGQSNSGNRGNQNFESETRQEDLD* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01803 369 MobiDBLite consensus disorder prediction 310 369 - -
Phac4g01803 369 SUPERFAMILY RING/U-box 187 250 - -
Phac4g01803 369 MobiDBLite consensus disorder prediction 310 359 - -
Phac4g01803 369 MobiDBLite consensus disorder prediction 254 296 - -
Phac4g01803 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 250 IPR013083 -
Phac4g01803 369 FunFam E3 ubiquitin-protein ligase RING1-like 164 250 - -
Phac4g01803 369 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
Phac4g01803 369 Pfam Ring finger domain 202 244 IPR001841 -
Phac4g01803 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 248 - -
Phac4g01803 369 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Phac4g01803 369 SMART ring_2 203 243 IPR001841 -
Phac4g01803 369 CDD RING-H2_RNF126-like 202 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01803 Phac-Chr4 45119289 45131179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01803 150 256 C3H Transcription Factor Family AT5G01980 52.336 2.11e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01803 K11982 - gmx:100818686 514.227