Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01714 ATGGCGACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTTTGACGCGTGAGTTGGCGGAAGATGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCAATGAGAACCGAGATCATCATCAGAGCCACCAGAACTCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTGACTTCAGTGGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAACTGTATGCGGAAAAGGTCAACAACAGAGGCCTGTGTGCCATTGCTCAGGCCGAGTCTCTTCGTTACAAGCTCCTCGGTGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGTGCCAAGGGATGCGAGGTAATTGTCAGTGGAAAACTAAGAGCTCAGAGAGCCAAGTCTATGAAATTCAAGGATGGGTACATGATTTCTTCTGGGCAACCTGTGAAGGATTACATTGATTCTGCAGTGAGACATGTTCTCCTAAGACAGGGTGTTCTTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGAAAACAGGGTCCTAAAACTCCCCTCCCAGATATTGTCACAATCCACTCTCCAAAGGAGGAGGATGAATATGCCCGTCCTGCTGCCGTCGCTGCTGTTGCTGCTGTTTTACCAACAACTGATATTGAGGTCCCTGTTGCTTGA 729 0.4815 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYARPAAVAAVAAVLPTTDIEVPVA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01714 242 FunFam 40S ribosomal protein S3 93 228 - -
Phac4g01714 242 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Phac4g01714 242 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Phac4g01714 242 CDD KH-II_40S_S3 5 95 - -
Phac4g01714 242 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Phac4g01714 242 NCBIfam 30S ribosomal protein S3 8 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Phac4g01714 242 Gene3D - 1 91 IPR015946 -
Phac4g01714 242 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Phac4g01714 242 Gene3D - 93 219 IPR036419 -
Phac4g01714 242 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Phac4g01714 242 Pfam KH domain 20 93 IPR004044 GO:0003723
Phac4g01714 242 FunFam 40S ribosomal protein S3 1 92 - -
Phac4g01714 242 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01714 Phac-Chr4 44267292 44269917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01714 1 242 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 85.484 8.23e-155 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01714 K02985 - gmx:100799156 437.573