Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01713 ATGGCGACTCAGATGAGTAAGAAGCGAAAGTTTGTTGCGGACGGAGTGTTCTTCGCGGAACTGAACGAGGTTCTGACGCGTGAGTTGGCGGAGGATGGTTATTCCGGCGTCGAGGTTAGGGTTACGCCTATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTGACTTCAGTGGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAGCTTTATGCAGAAAAAGTGAACAACAGAGGTCTATGTGCCATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTCCTCGGTGGTCTTGCGGTTCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTGATGGAAAGTGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGAAAACTGAGAGCTCAGAGAGCCAAATCCATGAAATTCAAGGATGGGTACATGATTTCTTCTGGACAACCGGTCAAGGATTACATTGACTCTGCAGTGAGACATGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCCAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCAGATATTGTCACAATTCACACTCCAAAAGAGGAAGAATACAACCACCCTTCTGCTGCTCCTGTTTTGGCTCCTGTTTTGGCCAATGATATTGAGGTCCCTGTTGCTTAA 723 0.4855 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEYNHPSAAPVLAPVLANDIEVPVA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01713 240 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Phac4g01713 240 Gene3D - 1 91 IPR015946 -
Phac4g01713 240 CDD KH-II_40S_S3 5 95 - -
Phac4g01713 240 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Phac4g01713 240 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Phac4g01713 240 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Phac4g01713 240 FunFam 40S ribosomal protein S3 93 226 - -
Phac4g01713 240 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Phac4g01713 240 Gene3D - 93 219 IPR036419 -
Phac4g01713 240 FunFam 40S ribosomal protein S3 1 92 - -
Phac4g01713 240 Pfam KH domain 20 93 IPR004044 GO:0003723
Phac4g01713 240 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Phac4g01713 240 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01713 Phac-Chr4 44260903 44264730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01713 1 222 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 90.135 1.10e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01713 K02985 - gmx:100799156 437.958