Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01711 ATGCAGTACACCTATATAAAACGCAATATATATCTCACTAAGAAGGTCAAGAGATCCCGGTTTGATGACGATGGAATATTCTGTTCCTGTACTCCTTCAGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCTGCGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTTATAGAATATGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTTTGGGAAATGAAACATCGTGGGGAAACAAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCTACTCGGGACATACAAAAGGGCGAACATCTGACTTACGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTTTGTGTAGGCGCAAATTGGGTGTCCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTACATACCAGGTTTATCAGAATGGACGTTTGCAAATTGGAAGTTCTCGTGTTGACCACCGAAAATGCTTACATAATTGCATTGGTGAAGTTATTAGGATAAAACGCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATAAATATTCTCGAAAACATTCAATCATGTTTGAGGATGGTCGTGTTGAACTTTATGACATGTCAAAAGAGGACTGGGAACTTGTGAGATAG 924 0.3972 MQYTYIKRNIYLTKKVKRSRFDDDGIFCSCTPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPAKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWEMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAALCRRKLGVRPTKPKMSSDAALKLVTYQVYQNGRLQIGSSRVDHRKCLHNCIGEVIRIKRFEKERFGVIKRFDKYSRKHSIMFEDGRVELYDMSKEDWELVR* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01711 307 SMART shorttest3 23 73 IPR006560 GO:0005634|GO:0042054
Phac4g01711 307 Pfam SET domain 85 190 IPR001214 GO:0005515
Phac4g01711 307 SUPERFAMILY SET domain 2 209 IPR046341 -
Phac4g01711 307 Gene3D SET domain 1 230 IPR046341 -
Phac4g01711 307 SMART PostSET_3 197 213 IPR003616 -
Phac4g01711 307 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 251 IPR025787 -
Phac4g01711 307 SMART set_7 74 197 IPR001214 GO:0005515
Phac4g01711 307 ProSiteProfiles AWS domain profile. 23 72 IPR006560 GO:0005634|GO:0042054
Phac4g01711 307 CDD SET_ASHR3-like 75 213 - -
Phac4g01711 307 ProSiteProfiles SET domain profile. 74 191 IPR001214 GO:0005515
Phac4g01711 307 FunFam Histone-lysine N-methyltransferase 1 229 - -
Phac4g01711 307 ProSiteProfiles Post-SET domain profile. 197 213 IPR003616 -
Phac4g01711 307 PANTHER SET DOMAIN PROTEINS 2 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01711 Phac-Chr4 44251165 44259458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01711 47 212 C2H2 Transcription Factor Family AT2G23740 34.409 2.02e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phac4g01711 SET 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01711 - - pvu:PHAVU_004G131700g 627.861