Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01617 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCTCCAACCACCAGCAGCACAAAATCTCCCAAGATCTGATTCTGGATGATTATGCTTCACTGGATGACAATGTTTCTGGGGAAAAATTCTCTAGAAGCCAACCAGAGAATCTTTTCTGTGAGGCAAATAAAAAGAATCATGACTCTAACGAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGGTGCCAAGAGAGATGAACTGAAGAAACTTTCCAGTCATAGCAATATGGAAAATAGCCATGAGGGCTTGCATACATCTTGCAACTTTACTGTCCACGAGAATAATGGCGTTATAGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAAGCCTAAAGTTTCAAAGTTACTACAATTACTGATTCAAGAAGGTCATGAGGTTGTTAGTTGCCTTTCATCAGAAATCAATGGTAGATTGCTCCACAGTGTGCAGTGTGAGGTAAACAATTCCAACTGTGTAGATCTATCTGAGCTGAGAAGGAAAGTTTCCAAAGCATTTCCATCATTTAGATGTTCTGATTAA 726 0.4022 MFPLQRGNELVIQFSNSSNHQQHKISQDLILDDYASLDDNVSGEKFSRSQPENLFCEANKKNHDSNEHMKKMIHKEIERQRRQEMATCYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNIKELGAKRDELKKLSSHSNMENSHEGLHTSCNFTVHENNGVIGIEITSGFREEKPKVSKLLQLLIQEGHEVVSCLSSEINGRLLHSVQCEVNNSNCVDLSELRRKVSKAFPSFRCSD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01617 241 SMART finulus 75 127 IPR011598 GO:0046983
Phac4g01617 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 140 IPR036638 GO:0046983
Phac4g01617 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Phac4g01617 241 Gene3D - 60 155 IPR036638 GO:0046983
Phac4g01617 241 Coils Coil 118 138 - -
Phac4g01617 241 CDD bHLH_AtORG2_like 70 146 - -
Phac4g01617 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 59 232 - -
Phac4g01617 241 FunFam Transcription factor bHLH126 61 149 - -
Phac4g01617 241 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01617 Phac-Chr4 43475511 43477468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01617 66 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.087 3.58e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac4g01617 HLH 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01617 - - gmx:100780888 400.593