Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01614 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCACCAACCTTAGATCGCTTCTGCCTTTAGAATATATAAAGGGAAAGCGTTCAGCCTCAGATCATGTGCATGAGGCTATGAATTATATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGCAAAGAGGGATGCCTTATTGAAGGTGTCTAATTTCAGTAGCACTGGTCCTGAGAATGAAAGCTCTTGTACTACTCATCTTCCACCTTTGGTTTTTGTTCATCCTTTCCCTGGAGGCCTTGAGATTATGTGCAGTTATAGCTTCAGGAGAAGTGTGTTTCCCATGTCAAGATTATTGGACATTCTACATAAAGAAGGACTTAGCGTGGTTAGCACTACTTCCATCAGAAGAGATGGTAGATTCATACACACCATACAATCAGAGGATCCCAATCACCCTAATATGATTGATACTGATTACTCTGAACTGCAAATAAAGCTTATGGAGGCATTATCATCTTCAATTGACGATTCAATTTCATGA 555 0.3964 MDENKKWMHKETERQRRQEMGKLCTNLRSLLPLEYIKGKRSASDHVHEAMNYINHLQDKVKQLQAKRDALLKVSNFSSTGPENESSCTTHLPPLVFVHPFPGGLEIMCSYSFRRSVFPMSRLLDILHKEGLSVVSTTSIRRDGRFIHTIQSEDPNHPNMIDTDYSELQIKLMEALSSSIDDSIS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01614 184 Coils Coil 46 73 - -
Phac4g01614 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
Phac4g01614 184 FunFam Transcription factor bHLH126 1 84 - -
Phac4g01614 184 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Phac4g01614 184 Gene3D - 1 78 IPR036638 GO:0046983
Phac4g01614 184 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 171 - -
Phac4g01614 184 CDD bHLH_AtORG2_like 5 75 - -
Phac4g01614 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Phac4g01614 184 SMART finulus 10 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01614 Phac-Chr4 43444457 43446182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01614 2 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.714 2.55e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac4g01614 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01614 - - pvu:PHAVU_004G124200g 351.673