Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01613 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCACCAACCTTAGATCGCTTCTGCCTTTAGAATATATAAAGGGAAAGCGTTCAGCCTCAGATCATGTGCATGAGGCTATGAATTATATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGCAAAGAGGGATGCCTTATTGAAGGTGTCTAATTTCAGTAGCACTGGTCCTGAGAATGAAAGCTCTTGTACTACTCATCTTCCACCTTTGGTTTTTGTTCATCCTTTCCCTGGAGGCCTTGAGATTATGTGCAGTTATAGCTTCAGGAGAAGTGTGTTTCCCATGTCAAGATTATTGGACATTCTACATAAAGAAGGACTTAGCGTGGTTAGCACTACTTCCATCAGAAGAGATGGTAGATTCATACACACCATACAATCAGAGGATCCCAATCACCCTAATATGATTGATACTGATTACTCTGAACTGCAAATAAAGCTTATGGAGGCATTATCATCTTCAAGTAAGTAG 543 0.3996 MDENKKWMHKETERQRRQEMGKLCTNLRSLLPLEYIKGKRSASDHVHEAMNYINHLQDKVKQLQAKRDALLKVSNFSSTGPENESSCTTHLPPLVFVHPFPGGLEIMCSYSFRRSVFPMSRLLDILHKEGLSVVSTTSIRRDGRFIHTIQSEDPNHPNMIDTDYSELQIKLMEALSSSSK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01613 180 Gene3D - 1 78 IPR036638 GO:0046983
Phac4g01613 180 Coils Coil 46 73 - -
Phac4g01613 180 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Phac4g01613 180 FunFam Transcription factor bHLH126 1 84 - -
Phac4g01613 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
Phac4g01613 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 171 - -
Phac4g01613 180 CDD bHLH_AtORG2_like 5 75 - -
Phac4g01613 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Phac4g01613 180 SMART finulus 10 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01613 Phac-Chr4 43444457 43446182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01613 2 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.714 1.89e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac4g01613 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01613 - - pvu:PHAVU_004G124200g 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac4g01613 4 43444457 43446182 Phac4g01613 4 43444457 43446182 ECH