Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01593 ATGGACGTGGACGGGGGCAGCAAGCGTGTGTACAACCGTCTTGGTGGGGACGCGAAGCACCAGAAAGTGTGTTTCCACTGGCAAGCGGGCAAGTGCAATCGCTACCCATGCCCCTTCCTGCACAGCGAATTGCCCGCATCTTCCCACGCCAACGGGGCCTCCTCGAAGCGTGCGCACGACAATTCGGGCTTATCGGGATTCTCGGGCCAGCGCGGACGCGGACGCTCCAATTTCAACAACACGTGGGGCCGTGGCGGGGGGCGCGGCGGCGGCGGAGGCGGTAGAGGGGTGGTGGTGAAGGCGGAAAAAGTTTGCAATTATTGGATTCAGGGAAATTGTAGTTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGAGTGGGAGATGGGTTTTCCTTGCTGACACAGCTCGAAGGGCATCAGAAGGCTGTGAGTGCAATCGCCTTTCCCTCTGGTTCAGATAAGCTGTATACTGGAAGCACTGACGAGACGGCAAGGATTTGGGACTGTCAGTCTGGAAAGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGGCCTGGAACACTCAAAATTTAGTGGAGCTAAGTCTAAATGGCCCCGTTGGACAAGTTTATGCTCTTGTTGTAAACAATGATATGCTTTTTGCTGGTACACAGGATGGATCTATATTGGTATGGAAGTTTAATGTAGCTAACAACTGCTTCGAGCCAGCTGCATCACTTAAGGGCCATTCTCGCGGTGTTGTTTCATTAGTTGTTGGTGCTAGTAGGCTTTACTCTGGGTCAATGGACAACACAATAAAAGTATGGAACCTTGAAACCTTGCAGTGTATACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTCTATCTTGTTCCTTGGACAAAACTGTGAAGGTATGGTATGCTACAGAAAGCGGAAACTTGGAAGTGACATATACTCACAATGAAGAACATGGTATACTTACCCTATGTGGGATGCATGACTCACAAGGCAAACCCATTTTGTTGTGTGCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATTAACTAAACAAGAGGTACGAGCAATCCAGATGGGGCCTAACGGCATATTCTTCACCGGAGATGGTACTGGTGAAGTAAGAGTGTGGAATTGGACAGCGGAGGCAACCACTACCGTCCAATAA 1284 0.493 MDVDGGSKRVYNRLGGDAKHQKVCFHWQAGKCNRYPCPFLHSELPASSHANGASSKRAHDNSGLSGFSGQRGRGRSNFNNTWGRGGGRGGGGGGRGVVVKAEKVCNYWIQGNCSYGERCKFLHSWRVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLVELSLNGPVGQVYALVVNNDMLFAGTQDGSILVWKFNVANNCFEPAASLKGHSRGVVSLVVGASRLYSGSMDNTIKVWNLETLQCIQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLCACNDNTVRLYDLPSFAERGKILTKQEVRAIQMGPNGIFFTGDGTGEVRVWNWTAEATTTVQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01593 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 178 IPR001680 GO:0005515
Phac4g01593 427 ProSitePatterns Trp-Asp (WD) repeats signature. 277 291 IPR019775 -
Phac4g01593 427 SMART WD40_4 253 290 IPR001680 GO:0005515
Phac4g01593 427 SMART WD40_4 380 417 IPR001680 GO:0005515
Phac4g01593 427 SMART WD40_4 334 377 IPR001680 GO:0005515
Phac4g01593 427 SMART WD40_4 293 330 IPR001680 GO:0005515
Phac4g01593 427 SMART WD40_4 130 169 IPR001680 GO:0005515
Phac4g01593 427 SMART WD40_4 209 246 IPR001680 GO:0005515
Phac4g01593 427 Pfam WD domain, G-beta repeat 257 290 IPR001680 GO:0005515
Phac4g01593 427 Pfam WD domain, G-beta repeat 133 169 IPR001680 GO:0005515
Phac4g01593 427 Pfam WD domain, G-beta repeat 295 329 IPR001680 GO:0005515
Phac4g01593 427 MobiDBLite consensus disorder prediction 48 83 - -
Phac4g01593 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 293 - -
Phac4g01593 427 SUPERFAMILY CCCH zinc finger 101 124 IPR036855 GO:0046872
Phac4g01593 427 ProSiteProfiles Zinc finger C3H1-type profile. 100 126 IPR000571 GO:0046872
Phac4g01593 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 169 - -
Phac4g01593 427 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Phac4g01593 427 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Phac4g01593 427 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Phac4g01593 427 SMART c3hfinal6 101 125 IPR000571 GO:0046872
Phac4g01593 427 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Phac4g01593 427 Gene3D - 116 213 IPR015943 GO:0005515
Phac4g01593 427 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Phac4g01593 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 299 IPR001680 GO:0005515
Phac4g01593 427 FunFam Zinc finger CCCH domain-containing protein 48 125 215 - -
Phac4g01593 427 Gene3D - 214 427 IPR015943 GO:0005515
Phac4g01593 427 SUPERFAMILY WD40 repeat-like 119 418 IPR036322 GO:0005515
Phac4g01593 427 PANTHER - 101 422 IPR044715 -
Phac4g01593 427 MobiDBLite consensus disorder prediction 48 94 - -
Phac4g01593 427 FunFam Zinc finger CCCH domain-containing protein 48 217 425 - -
Phac4g01593 427 Pfam Zinc finger domain 105 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01593 Phac-Chr4 43001596 43011078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01593 232 417 Miscellaneous Gene Families AT5G08390 27.041 1.00e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac4g01593 WD40 8.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01593 - - gmx:100775542 794.653