Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01589 ATGGCTTCTGCAACACTCTCTCTGCATTACCCACTTCTTCTTCTTCGTTCTCCTCTTTCAACCAGAATTACCAAACCACCCCCCTCACCCCGACCCCTTCTTCTCCCTCACCCTCTCCACTCGCGATTCCTCCTCCCTCCGCCACGCGCCTACGTCGCCGCGCCCGCATCCGACCACAATTTCGGAGACCCGGATCCGAAGCTGGTCGGGTTGGGTTCAGAGAACGCGAAGCCGCAAAACGTGATCACGTGGAGCCTCCTCTGCACGCTTCTCATGAACCACAAACTGCGCCTGGCTCTCCTGGTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCCTCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGAGCTAGACCTGAACCGTTATGGAAGCTACTTACTAAAATTGGAGTTCTGTATGCCATGGAGCCACTTTTAACTATTATTTTTGTTATAAACATGAACATTGTGTGGGAGAAAATTATGTCAACACTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTCAGCGAGAATGTCTCAAGGGATCGCGGATTCAGAGCATTATCTGAGGTCATTGGAACAATATTCATACTTTTTTCTTTAGCACCGCAACTGGCACCCATTCTAGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCTACATTGCCAGTTTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGACTGTGTAACTGAAACGTTTTCAGCTATTAGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATAGCATTATATTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATCGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGAAGTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTTTCTGGAGTTGAAGTTGATGATGCTCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAACAGTGGATGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACTGAGAATAGCCAAAAAAATTTTCACTATATGTCAGCTCTCAAAACATCAAGCAATTTATTTAGCTTAGCTTGGTCCGGAGATATTTGTCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACATGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTAGTGGGTCCAAGTGGTGCAGGCAAAAGTACAGTAGTCCAGCTATTGTCTCGATTTTATGAGCCAATAAGTGGCTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCAGGTTGTGTCTATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATGTCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCTATTGCCCGCGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTTAGTGAACGCTTGGTCCAGGATGCTCTCAACCAGTTGATGAAGGGAAGAACCACTTTAGTAATAGCCCACCGATTAAGCACAGTGCAAAATGCATATCAAATTGCAGTCTGTTCTGAGGGCAGGATTGCAGAATTAGGCACTCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTGAATAA 2109 0.4301 MASATLSLHYPLLLLRSPLSTRITKPPPSPRPLLLPHPLHSRFLLPPPRAYVAAPASDHNFGDPDPKLVGLGSENAKPQNVITWSLLCTLLMNHKLRLALLVATLFACSTCTLSMPLFSGRFFEVLIGARPEPLWKLLTKIGVLYAMEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFSLAPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSFAAVERINSVFSGVEVDDALAYGLERELRQKTVDDENYKLVLSNISTENSQKNFHYMSALKTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILHGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPISGCITVAGEDVRTFDKSEWAQVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNQLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01589 702 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac4g01589 702 SUPERFAMILY ABC transporter transmembrane region 87 390 IPR036640 GO:0005524|GO:0016020
Phac4g01589 702 SMART AAA_5 485 679 IPR003593 GO:0016887
Phac4g01589 702 ProSitePatterns ABC transporters family signature. 599 613 IPR017871 GO:0005524|GO:0016887
Phac4g01589 702 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 67 700 IPR039421 -
Phac4g01589 702 Pfam ABC transporter transmembrane region 101 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac4g01589 702 Pfam ABC transporter 476 627 IPR003439 GO:0005524
Phac4g01589 702 Gene3D - 456 699 IPR027417 -
Phac4g01589 702 Gene3D ABC transporter type 1, transmembrane domain 71 396 IPR036640 GO:0005524|GO:0016020
Phac4g01589 702 FunFam ABC transporter B family member 28 75 398 - -
Phac4g01589 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 697 IPR027417 -
Phac4g01589 702 CDD ABC_MTABC3_MDL1_MDL2 458 697 - -
Phac4g01589 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 458 696 IPR003439 GO:0005524
Phac4g01589 702 CDD ABC_6TM_TAP_ABCB8_10_like 105 390 - -
Phac4g01589 702 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 456 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01589 Phac-Chr4 42938459 42954210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01589 455 702 Calmodulin-binding Proteins AT2G36910 54.400 3.32e-75 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01589 K05657 - gmx:100791034 1203.73