Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01564 ATGTTTTATTTTAGATTCTTTAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACTGATCTCAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTGAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAAACACAATTGGAAAGGCACGAGAACATGGTTCTTAAGCAGGAGAATGACAAGCTCAGAGCTGAGAATGGTGTGATGAAGGAAGCTTTGGCTAATCCTATATGTAACAACTGTGGTGGTCCAGCCATTCCTGGTCAAATTTCATTGGAGGAGCACCAGACTAGAATTGAAAACGCTCGTCTGAAGGATGAACTGAACCGAATATGTACATTAGCAAACAAGTTCTTGGGCAGGTCCCTCTCATCACTGGCCACTCCTATGTCTCTGCCACCCACAAATTCTGGTCTTGAACTTGCCATTGGAAGAAATGGAATTGGTGGTTCAAGCAATTTTGGCATGCCCATGCCAATTGGGTTTGATGTGGGTGATGGAGCTTTAGGCTCCTCACCTGCAATGCCAAGTATGGCTGCTAGAGTACCAGTGGGAATGATGGGAAACGAAATCCATCTCGAAAGATCTATGCTTATAGATATTGCAATAAATGCTATGGATGAATTAGTTAAGATGGCTCGACAAGATAACCCTCTTTGGATTAAGAGTTCTGATGGTAGGAACGAAGTACTAAACTGTGAGGAATACGCAGGAATATTTCCTACCTTTGTTGGAACAAAACCTGCTGGCTATGTAACTGAAGCTACAAGGGCTACTGGAGTTGTATTAGCCAGCAGTTTAGGCCTTGTGGAAACATTCATGGATGTGGATCGATGGTCAGAGATGTTTTCATCTATGGTGGCTAGTGCTTGCACTTTGGATGTGTTATCTAGTGGCACAAATGGAACGAGAAATGGAGCTTTGCAAGTGATGTTAGCTGAATTTCAACTGCTTTCCCCACTGGTCCCTACTCGTCAATTGAGTTTCCTCAGGTTCTGCAAGCAACATGCTGAAGGTGTATGGGTTGTGGTTGATGTTTCTGTTGATATCATTCGTAATGCTGCCAATTCACATCCATTAATGAGTTGTAAGAGGCTTCCTTCTGGTTGTATCATTCAGGACATGCCCAACAATGGTTTGTCCAAGATTACATGGGTTGAACATTCTCAGTATGATGAGAGTGCGATCCACCAACTTTGTCGTCCATTGGTTAGTTCTGGCATTGGCTTTGGTGCTCAGAGATGGATTGCATCTCTCCTAAGACAGTGTGACTGCTTGGCAATCCTCATGTCCCCTCCTGCTCCATCTGATGACCCTATAGTCCTCAGCCAATCCAATAGGAGAAGCATCATGAAGCTGGCACAACGCATGACTGAGTGCTTCTGCTCAGGGATTTGTGCTTCATCTGCACGCAAGTGGGATGTTCTTCACATTGGTAGTCTGGCTGATGACATGAAAATCATGGCCAGGAAAATTGTGGACGAGCCAAATGAGGCTCCTGGCATTGTATTGAGTGCTTCAACTTCTGTCTGGATGCCCGTTTCCCGACAAAGGGTGTTTGACTTCTTACGTAATGAACAGTTGAGAGGGGAATGGGACATGTTGTCTAAAGGTGGTCCAATGAAGGAGATGCTCCATGTTCCTAAAGGCCAAGAACATGGAAACTGTGTTTCCATCCTTCATTATGCTAATAATGAGAGTAACATGTTTTATCTGCAAGAGTCATGGACTGATGCATCTGGCTCAATGGTTGTATATTCTCCCATCAACATGCAATCTTTGAACATGATGATGAACTGTGGAGATTCATCCGTTGTGGCTCTTCGTCCCTCAGGATTTGCTATTCTGCCAGACGGCCACTCCAACAACAGTGACAACAATGATGGTGGCGGTAGCTGTTTGCTAACAGTTGGATTACAAATGTTGCAGAATGACAACCAATCAGCTAAGTTCACAATGGAGTCAGTTCAAACTGTGAATTCCCTCCTCTCATGCACCATTCAAAAGGTCAAAGAAGCATTAGGAGTTTCATGA 2034 0.4405 MFYFRFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSLATPMSLPPTNSGLELAIGRNGIGGSSNFGMPMPIGFDVGDGALGSSPAMPSMAARVPVGMMGNEIHLERSMLIDIAINAMDELVKMARQDNPLWIKSSDGRNEVLNCEEYAGIFPTFVGTKPAGYVTEATRATGVVLASSLGLVETFMDVDRWSEMFSSMVASACTLDVLSSGTNGTRNGALQVMLAEFQLLSPLVPTRQLSFLRFCKQHAEGVWVVVDVSVDIIRNAANSHPLMSCKRLPSGCIIQDMPNNGLSKITWVEHSQYDESAIHQLCRPLVSSGIGFGAQRWIASLLRQCDCLAILMSPPAPSDDPIVLSQSNRRSIMKLAQRMTECFCSGICASSARKWDVLHIGSLADDMKIMARKIVDEPNEAPGIVLSASTSVWMPVSRQRVFDFLRNEQLRGEWDMLSKGGPMKEMLHVPKGQEHGNCVSILHYANNESNMFYLQESWTDASGSMVVYSPINMQSLNMMMNCGDSSVVALRPSGFAILPDGHSNNSDNNDGGGSCLLTVGLQMLQNDNQSAKFTMESVQTVNSLLSCTIQKVKEALGVS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01564 677 SMART HOX_1 1 50 IPR001356 GO:0003677
Phac4g01564 677 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 674 IPR042160 -
Phac4g01564 677 ProSiteProfiles 'Homeobox' domain profile. 1 46 IPR001356 GO:0003677
Phac4g01564 677 Pfam Homeodomain 5 44 IPR001356 GO:0003677
Phac4g01564 677 CDD START_ArGLABRA2_like 195 423 - -
Phac4g01564 677 SMART START_1 200 425 IPR002913 GO:0008289
Phac4g01564 677 Coils Coil 40 60 - -
Phac4g01564 677 SUPERFAMILY Homeodomain-like 5 49 IPR009057 -
Phac4g01564 677 ProSiteProfiles START domain profile. 191 428 IPR002913 GO:0008289
Phac4g01564 677 CDD homeodomain 5 46 IPR001356 GO:0003677
Phac4g01564 677 Gene3D - 200 408 IPR023393 -
Phac4g01564 677 SUPERFAMILY Bet v1-like 194 425 - -
Phac4g01564 677 SUPERFAMILY Bet v1-like 447 641 - -
Phac4g01564 677 Pfam START domain 201 424 IPR002913 GO:0008289
Phac4g01564 677 ProSitePatterns 'Homeobox' domain signature. 21 44 IPR017970 GO:0000981|GO:0006355
Phac4g01564 677 Gene3D - 4 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01564 Phac-Chr4 42614543 42619304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01564 7 674 Homeobox Transcription Factor Family AT3G61150 53.333 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac4g01564 START 8.3e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01564 K09338 - gmx:100784656 1100.89