Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01549 ATGGCTCAGCCGCCTCCGGTGGAACACAACGGCGACTCCACCACCACCACCTCTGCCGCTGCAGACTCACAGAGATCTATTCCAACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACCAATCCATCGACGATGTTATTTCCTGGAACGACGACGGATCAACGTTCATCGTTTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGTTTCGTTCGCCAACTCAACACTTACGGATTCAGGAAGGTCGTACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGTCGAGGCGAGAAGCGCCTTCTGAGCGAAATTCAACGGCGGAAGATTTCGTTGCCGGCGCCGACTCCGTGTCTGACAGCGCCGGCAACGGTTGTTGTTCCGACGCCGATGCCGTTGACTGCGATTCCGATCATATCCCCGTCGAACTCCGGCGAGGAGCAGGTGATATCGTCGAACTCTTCACCGTCGCTCGCGCCGGCGGAGCTCATCGACGAGAACGAGAGGCTGAGGAAAGAGAACGTTCAGTTGACCAAAGAGCTCGGGGAGATGAGATCGCTCTGCAACAATATATATGCTCTCATGTCAAATTACGCCAACGCCAACGCCAACGCCAACGGTAACACTAACGGGAACGGAAGTTACCAAACGGACGGCGGTGCTGGTGGCGCTCAGGGAAGTAGGGAGTCCGGCATGACGGCGTTGAAGCCGCTCGATTTGATGCCGACGAAACGGATCTCCGGTGAGGACGCGGCGGAGGTGATGAATCCGAAGCTATTTGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGAAGTTGTGAAGATTGTGGAGAAGAAGGTGGAAGAAAGAAAGATACGCTGCTGCGTTTGCATCATCCAGGTCCTGCGGACGTGAAACCTGAGCCGTTGGATTGCCAGAACCATCGCGAGAATCAGGAAACGCCGTGGTTAAGTCAGTGTCACATAGCAAATCAGAGGGTGTGTAACTGA 1035 0.5449 MAQPPPVEHNGDSTTTTSAAADSQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLSEIQRRKISLPAPTPCLTAPATVVVPTPMPLTAIPIISPSNSGEEQVISSNSSPSLAPAELIDENERLRKENVQLTKELGEMRSLCNNIYALMSNYANANANANGNTNGNGSYQTDGGAGGAQGSRESGMTALKPLDLMPTKRISGEDAAEVMNPKLFGVAIGAKRAREGGGSCEDCGEEGGRKKDTLLRLHHPGPADVKPEPLDCQNHRENQETPWLSQCHIANQRVCN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01549 344 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g01549 344 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g01549 344 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Phac4g01549 344 Gene3D - 23 121 IPR036388 -
Phac4g01549 344 MobiDBLite consensus disorder prediction 222 242 - -
Phac4g01549 344 FunFam Heat stress transcription factor B-4 23 121 - -
Phac4g01549 344 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g01549 344 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g01549 344 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g01549 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 212 IPR027725 -
Phac4g01549 344 Coils Coil 179 199 - -
Phac4g01549 344 MobiDBLite consensus disorder prediction 8 24 - -
Phac4g01549 344 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g01549 344 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01549 Phac-Chr4 42398459 42400994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01549 5 344 HSF AT5G62020 47.059 1.28e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac4g01549 HSF_DNA-bind 7.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01549 K09419 - gmx:100812267 530.406