Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01531 ATGCCAAAAGAATTCCCCATTCCATCTTTTTCACTTTTCCTTCCCAATATAACCCCCCTCACCACACCTTCAAACCCAAATCTCTCCCACCTCACTCTCCTCTTCACAGACTCTAAATCACACACCCAAATGCCTCAATCAAATCAATTTCACACCTTTCACTGCACCCTCTTTGCATTCATCTCCCTCTTCTTCCTCCATCTTTCCACAGCACAAGCACAATCCTCCATGGAGCCTGTGCCCACATACATCACCCACCACAGCTGGGAGCCCTCGGTTGCCATCACAGTTGGAGCCATCATCTTTGCTCTTCTTGTCATGGGCATCCTCTCCATCTACCTCCGCAGGTGTTCTGAGGCACACATCATCATCACCACGCAGACCACCACCACAGTCCCCTGCTCCTGCGCACAGGGGATCAACAGGGAACTCCTCAATACCTTTCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAAGGTGAAGAAACGCTCGAATGTGCGGTATGCCTGACGGATTTCTCAGACAAAGACGCCCTCAGACTCCTCCCCAAATGCAACCACGTGTTCCACCCTCAATGCATTGATTCCTGGCTCGCTTCCCACGTGACATGCCCAGTTTGCCGCGCGAATCTCAGTCAGGATCCGTGCCAGGTTGCCATAACAGTCCCTTCCCTTCATGATGAGGAAGTTTCCGGAAGTGAAGAAACTATGGCAGAACCAAATCAAAACACAAACGCAAACCATGCCGTGAATCAGGTTTGCGTTGGAAGTCCTACATTGAGTGATGATACAACCAAAACAGTGTATGTAAGTGAAGAACAACCTTCATCTCCTGATCTTCTTCCTGAGTCGGACACAAACTCAAATTCTGTCACTGGTGATGGGGTGGTTGCTGTTGCTGAAAGGAACCTTTCCAGGTCAAATTCCACTGGGCATTCTCTTGTGGGTGTGGAGAGGTACACGTTGAGGTTACCGGAAGACGTGAGGAGGTACATTCTGGTGAACCATGGAAGGAGTGTTCAACGTTCTGCTAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAAGAAAGTTACGCGAGGAAGAGGGTGGAGAAGAGGTGGGTGATTTGCACGCCGCCGTTTGTGGCAAGCCATGGCTGA 1146 0.5 MPKEFPIPSFSLFLPNITPLTTPSNPNLSHLTLLFTDSKSHTQMPQSNQFHTFHCTLFAFISLFFLHLSTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMGILSIYLRRCSEAHIIITTQTTTTVPCSCAQGINRELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDALRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLSQDPCQVAITVPSLHDEEVSGSEETMAEPNQNTNANHAVNQVCVGSPTLSDDTTKTVYVSEEQPSSPDLLPESDTNSNSVTGDGVVAVAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEESYARKRVEKRWVICTPPFVASHG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01531 381 SMART ring_2 168 209 IPR001841 -
Phac4g01531 381 Pfam Ring finger domain 167 210 IPR001841 -
Phac4g01531 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 216 IPR013083 -
Phac4g01531 381 CDD RING-H2_EL5-like 167 210 - -
Phac4g01531 381 SUPERFAMILY RING/U-box 153 216 - -
Phac4g01531 381 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Phac4g01531 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 69 323 - -
Phac4g01531 381 MobiDBLite consensus disorder prediction 273 293 - -
Phac4g01531 381 FunFam E3 ubiquitin-protein ligase ATL6 128 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01531 Phac-Chr4 42133851 42135940 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01531 63 335 Rapid Response to Elicitors AT3G05200 39.298 1.88e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01531 K10664 - gmx:100782532 460.685