Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01523 ATGGGGTCTGAGTTTTCTTGCATGATTAAAGAGGCTAAAATATTGGGAATGGCTCTTGGAATTTCTTGTTTGAATGGTATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAGTCATTATGTGATGGATGTTTCAGTCTAGATTCAGACATTTTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGTGGATATGTCGTTTGTTATGAGATGACAGATATTGAAAGAAAACTTGGACTTGGAAGGGACTCATTGATTGCTCTTTCCTTGCTTCTTGGCAGTGACTATTATCAAGGGGTTCATGGTCTGGGTCCAGAGTCGGCTTGTGAGATAGTCAAATCAATTGGGGACCAATTTGTTCTTAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAGAGGAGGCAAGAATGATTTAGGGCGGGATGATAACATTTTAGAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCTGCAGATTCAGATATTGTGCACAAGGCTCTTGCTCAATATACGTTTCAACGTACTAAACTCCAGCAGCTATGTGCTGAATTCTTTCTGTGGCCTTCGGAGAAAACAGATGGGTATATTCTTCCAAGTATAGCTGAAAGAGAATTACGTCGATTTGCCAATTTGCGTTTAACTTCATCTCAAGTTGGACTGAACCTTCCTTTAGATGAGATCCCTGTAAAGTGTCCTGTCTCAGAAATCATCAAGAGCCGAAAAGTTCAAGGGAGAGATTGCTATGAGGTTTCTTGGGAAGGAATGGTGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCCTGCCCTGAGAAGATTTTGGAGTTTGAGGAAAGAAAGGCTCAAAAGAAGAAACAAAATATTCAGAAAAGAAGACCAAAGAAAAAGGAAACTAATTCATCTCTTGCTGAGCTTGATCTAAAACTTCAGAATTTGTTGCTTGATAATAATTTGAGAGACGAAGCCAACTTCAATGCCTCTGATTCTTCAGAAGGGATATCAAGGATTACAACTCCTATGGCTGAAGCTGATCTTAATACTGAAGACTTGTTGCATCTATCACATGACATAGAACACACTGGGTTGATTTATGATACTAGCAACATATATAGTAGCAATAAGGTGGTTTCCACTATTGGTAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAGAAATTCAATTTTTCCTCAAAATGTGAGCAATCAAGTGACCAAAACATCGAAGTGATTAATTTGAGTGATTCAGAAAATGACGTGTCTGTTGAACACAAGCAGAAAGCCAAGGAACTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1386 0.3838 MGSEFSCMIKEAKILGMALGISCLNGIEEAEAQCALLNFESLCDGCFSLDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGLGRDSLIALSLLLGSDYYQGVHGLGPESACEIVKSIGDQFVLKKFASEGLGWVKKRRGGKNDLGRDDNILEVINAYMKPKCHSADSDIVHKALAQYTFQRTKLQQLCAEFFLWPSEKTDGYILPSIAERELRRFANLRLTSSQVGLNLPLDEIPVKCPVSEIIKSRKVQGRDCYEVSWEGMVDGLETSIVPADLIESACPEKILEFEERKAQKKKQNIQKRRPKKKETNSSLAELDLKLQNLLLDNNLRDEANFNASDSSEGISRITTPMAEADLNTEDLLHLSHDIEHTGLIYDTSNIYSSNKVVSTIGKNEIIDLLSPSPPKKFNFSSKCEQSSDQNIEVINLSDSENDVSVEHKQKAKELRLFLASIRNEIH* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01523 461 FunFam Flap endonuclease GEN-like 1 87 143 - -
Phac4g01523 461 Pfam XPG I-region 20 102 IPR006086 GO:0004518
Phac4g01523 461 SUPERFAMILY Chromo domain-like 244 300 IPR016197 -
Phac4g01523 461 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 2 405 IPR006084 -
Phac4g01523 461 Gene3D - 242 311 - -
Phac4g01523 461 ProSiteProfiles Chromo and chromo shadow domain profile. 243 304 IPR000953 -
Phac4g01523 461 Gene3D - 3 86 - -
Phac4g01523 461 SMART xpgineu 17 87 IPR006086 GO:0004518
Phac4g01523 461 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 87 223 IPR036279 -
Phac4g01523 461 SUPERFAMILY PIN domain-like 4 102 IPR029060 -
Phac4g01523 461 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 16 33 IPR006084 -
Phac4g01523 461 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 92 107 IPR006084 -
Phac4g01523 461 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 37 57 IPR006084 -
Phac4g01523 461 Gene3D - 87 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01523 Phac-Chr4 42028053 42033550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01523 19 123 Core DNA Replication Machinery Family AT5G26680 30.841 4.51e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01523 K15338 - gmx:100806919 776.933