Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01512 ATGGAAAACCAGCCACTAGAAAAAGCAAAACCAAAATACAGAAAAGGGTTATGGTCACCTGAAGAAGATAATAAGCTCAGAAGCCACATCCTTAAGCATGGTCATGGATGCTGGAGCTCTGTCCCCATTAAGGCAGGTTTACAAAGAAATGGAAAAAGTTGCCGACTAAGGTGGATTAACTACCTGAGGCCAGGATTGAAGAGAGGGGATTTCAGCAAACATGAAGAAGATACAATCAGAACCCTTCACCACATGTTAGGCAACAAATGGTCTCAGATAGCACAACATTTGCCAGGAAGGACTGACAATGAGATAAAGAACTACTGGCATTCATATTTGAAGAAGAAAGTGGTGAAAGCTAAGGAAACAGGATCTGATAAACAAATTCAGCATGCTAGTTCAAGTTCAGACTCAGTGGACAATTCACTCTCTCCGCATAAACTTGCAATTCAAGATCCAAGTTATGCATTGCTACAAAACATGGAAAAAACAGCAACACATTCTGATAACTTTTTCTCACACAGCTATGACTTTTCCCAAGAGGCTTGTCAGAGTTCCCTACCAAAACTCTTATTTTCTGAGTGGCTTTTAGAGGATCAAGTAAATGGTGCAGGCTCAGTGAATTCTGATGACTCTTTGGTATTGGGAAATGTATTTGATCAAAATTCATCTTTCCAAGAAGCTATAATGCATTTGTTAGAAGGGAACTTTGGTGAAGAGTATCATAATAGTCTCATTCAGAGTTCAACCACTGATGTGTACAATTCACAGCTTAAGCAATCAAATCAAGTGGATGGAGATGATTTCCTTCATTGTATTCCTGGGAATGATTTATGTAGCAATTTCAGCCTAACCAATCATGCTATGTAA 870 0.3897 MENQPLEKAKPKYRKGLWSPEEDNKLRSHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGDFSKHEEDTIRTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVVKAKETGSDKQIQHASSSSDSVDNSLSPHKLAIQDPSYALLQNMEKTATHSDNFFSHSYDFSQEACQSSLPKLLFSEWLLEDQVNGAGSVNSDDSLVLGNVFDQNSSFQEAIMHLLEGNFGEEYHNSLIQSSTTDVYNSQLKQSNQVDGDDFLHCIPGNDLCSNFSLTNHAM* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01512 289 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Phac4g01512 289 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Phac4g01512 289 CDD SANT 71 113 IPR001005 -
Phac4g01512 289 CDD SANT 18 62 IPR001005 -
Phac4g01512 289 PANTHER MYB DOMAIN PROTEIN 55 8 231 - -
Phac4g01512 289 SMART sant 14 64 IPR001005 -
Phac4g01512 289 SMART sant 67 115 IPR001005 -
Phac4g01512 289 MobiDBLite consensus disorder prediction 123 143 - -
Phac4g01512 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phac4g01512 289 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Phac4g01512 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Phac4g01512 289 Gene3D - 15 67 - -
Phac4g01512 289 FunFam MYB transcription factor 12 68 - -
Phac4g01512 289 FunFam MYB transcription factor 70 141 - -
Phac4g01512 289 Gene3D - 70 141 - -
Phac4g01512 289 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phac4g01512 289 MobiDBLite consensus disorder prediction 127 143 - -
Phac4g01512 289 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01512 Phac-Chr4 41661379 41664232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01512 8 196 MYB Transcription Factor Family AT3G48920 53.158 1.71e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac4g01512 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01512 K09422 - gmx:100803537 513.842