Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01496 ATGTCAGAATCCAAGGAAGAAAATCCTGACCTTCTTCCCAAGTCAAAGCAACAGGAGGAGCATGGGTTTGCCATGGATTTTGACATTGGCTTGGAAAGTCTATGGTCCTTGGATCATATATCTTTGGTCTCTAACCCCATGTCTCCTTTTCTCTTATCCACTATCTCTGAACAACCCTTTTCTCCTATCTGGGCTTTTGATGTTGAAGATGAGAGGCAAATCAGAATTGCAACTGCAGGTAACACAAAAGCAGCAATTGAAAATCCAGTAGAAAGTTATGAGAACAAGAAAACTGTGTCACCACCTTTTGTAGCTGTACCACCTTCAGAAAACCCAGATGGCTATTGTCTAATAAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCCGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTCTATCAGTATAGAACAGCGTCTCTGATGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCCGGTAGAGTTTTTCAGCACAGAATTCCAGAATGGACTCCAAATGTTCAGTACTATTCTAGCAAAGAGTATCAGCGCCTAAATCATGCACAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCCTGCAGGACAGTCATGTGTAGCTGTGCTTGAGTTGATAATGACTTCACCGAAGATTAACTATGCTCCTGAGGTTGACAAAATCTGCAAAGCCCTTGAGGCAGTCAATTTAAGGAGTTCAGAAATTTTGGAGCATCCATACAATCAGATTTGTAATGAAGATCGCCAGTACGCATTAGCAGAGATTTTGGAGATACTAACAGTTGTGTGTGAGACTCATAGTTTGCCTCTAGCACAAACATGGGTTCCATGTGAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTATGCATGTCTATAACTGACGTAGCATTCTATGTCATAGAGCCTCATACATGGGGTTTCCATGAGGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGAGCATTTTTGTCTCACAACATGTGCTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCATTAGTACATTATGCTCTCATGTTTGGTTTAACCAGCTCTTTAGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGAATATGTGCTAGAGTTTTTTCTTCCTCCAAGGATCACAGACTTTAATGAACAAAAACGTTTGTTGGGGTCAATATTGGCCACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCCGCTGGTGTTGAACTTGAGCAGAATTGCTCCATTGAAATTATAGAAGCAAGAAAAGAAGGAGTTCAGTTGAGGTTTGAATCAATTCCAATTACTCAATCTTCTGAGTTACCACCTAGACATGCCTCACCAAATATGGGGGAGAGGCTGCCACCGGTTCCATCAGAGCAGCAAATAACGGTAGACTTCGATGACATAAATGATGGAAAGAATCTTGGTGATAATACAGGTGGACACATTGATCAGAACACTTCCTTGGAAGCAAGAACCAAAAAGAAACCCTCAGAGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAACATGGGATATCTCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTATCCAAACTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGTGCATTTGGTTTGAACTCTCTAAGTACTGGTTCTTTTCCCTCCACTTCAAACAAGTTCAACCGCCAAACCTCATTGACCATTAGGCCATCAGAACCTAAGATCAATGAAAATGATTTTGATGCTTCTAGAGCATCAGAATCAAACAGACAGGCCGGGGTGGAAGATCACTTCCTAAGTACAAGGACACAAAATCCTGAGAAAGTGATTAATGAAAAAGTTGTGGCCATTCAGGAGACTGGCACTAAAGGCACAACCAGGTTTAGAACTGGGAGCGGCTCAAGTGAAGAAAGTGCGAATCCTTCTCCTCATGGTTCATGCCAAGGTAGTCCCCCAAATGAAATGTCACCTCCAAAAGATATATTTGTAACAGGCATCAGTGAGCAATGTCATGTGTTAAGGGGATCACTGGGGTCAACACTGTACTCAACTAGTACACCGAACCGTGCAACTGCATACCCTATGCCTAACAACTTTGTGGAAATAACAGAACCTCAAGAACCATTTGGAGGACAACTACTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGAAATCTGTGCCCTTCAGCCGATGCTGTTTTGGAGGATCAGGTTCCCGAACATTGGAGAATGAATCATCAATGTTCTGATTTGACTCCTGTGCAACACATGGATACTCTCAATAATAATAACAACAACATGACACCTTTTGCTGTTAGGAAAGAGGTGAAGAGTGTGACCATTAAGGCAACTTATAGAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGCTATTGTGGAATTGAAAGAAGAAATTGCCAAAAGATTGAAACTAGAGGAGGGAACATTTGACATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCTTGCGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTTGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGTTGTTAA 2943 0.421 MSESKEENPDLLPKSKQQEEHGFAMDFDIGLESLWSLDHISLVSNPMSPFLLSTISEQPFSPIWAFDVEDERQIRIATAGNTKAAIENPVESYENKKTVSPPFVAVPPSENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLYQYRTASLMYMFSVDGENDEILGLPGRVFQHRIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEILEHPYNQICNEDRQYALAEILEILTVVCETHSLPLAQTWVPCEHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITDVAFYVIEPHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSSLAVCLQSSHTGNDEYVLEFFLPPRITDFNEQKRLLGSILATMKPHFQSLKIAAGVELEQNCSIEIIEARKEGVQLRFESIPITQSSELPPRHASPNMGERLPPVPSEQQITVDFDDINDGKNLGDNTGGHIDQNTSLEARTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTGSFPSTSNKFNRQTSLTIRPSEPKINENDFDASRASESNRQAGVEDHFLSTRTQNPEKVINEKVVAIQETGTKGTTRFRTGSGSSEESANPSPHGSCQGSPPNEMSPPKDIFVTGISEQCHVLRGSLGSTLYSTSTPNRATAYPMPNNFVEITEPQEPFGGQLLEGVGSSKDLRNLCPSADAVLEDQVPEHWRMNHQCSDLTPVQHMDTLNNNNNNMTPFAVRKEVKSVTIKATYREDIIRFKISLNCAIVELKEEIAKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRLVVHDILPILGSSCESSGDWKGC* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01496 980 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Phac4g01496 980 ProSiteProfiles PB1 domain profile. 881 963 IPR000270 GO:0005515
Phac4g01496 980 Gene3D - 878 962 - -
Phac4g01496 980 MobiDBLite consensus disorder prediction 542 575 - -
Phac4g01496 980 MobiDBLite consensus disorder prediction 659 675 - -
Phac4g01496 980 MobiDBLite consensus disorder prediction 719 763 - -
Phac4g01496 980 MobiDBLite consensus disorder prediction 659 705 - -
Phac4g01496 980 FunFam RWP-RK domain-containing protein 878 962 - -
Phac4g01496 980 PANTHER PROTEIN NLP8 57 975 IPR045012 GO:0003700
Phac4g01496 980 Pfam PB1 domain 882 962 IPR000270 GO:0005515
Phac4g01496 980 MobiDBLite consensus disorder prediction 721 756 - -
Phac4g01496 980 MobiDBLite consensus disorder prediction 688 705 - -
Phac4g01496 980 MobiDBLite consensus disorder prediction 557 575 - -
Phac4g01496 980 Pfam RWP-RK domain 578 625 IPR003035 -
Phac4g01496 980 CDD PB1_NLP 882 962 IPR034891 -
Phac4g01496 980 SMART PB1_new 881 963 IPR000270 GO:0005515
Phac4g01496 980 MobiDBLite consensus disorder prediction 505 524 - -
Phac4g01496 980 SUPERFAMILY CAD & PB1 domains 881 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01496 Phac-Chr4 41173525 41178806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01496 252 976 NLP Transcription Factor Family AT4G24020 51.293 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phac4g01496 PB1 1.3e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01496 - - gmx:100780901 1665.2