Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01443 ATGAAAAAGAAGGATCCCAATATTGATGATAAGAGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCCTATGGCACACACGTGGCCCAAAACGCGGGGAACCACGTGGTTTTGCTTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTTGCCTGCGGCCGTCCACTGGTTGTTCGTCTTGCCGGTGAGAAGTGCTTGTTGGAAACAGCTGATAAGTCTACAAAAGCAGCAAGTGAAGGACAGAAGATGCTTCTCATTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAATTAAAATCCTTGGAGGAGGAGAGTTCTAGGACGAAGAAGCAGAAGCAAAATGGCAACATTTCTTGA 483 0.4244 MKKKDPNIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGQKMLLIGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQNGNIS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01443 160 Coils Coil 133 153 - -
Phac4g01443 160 Gene3D - 2 135 IPR012677 -
Phac4g01443 160 SUPERFAMILY RNA-binding domain, RBD 6 97 IPR035979 GO:0003676
Phac4g01443 160 SMART rrm1_1 15 91 IPR000504 GO:0003723
Phac4g01443 160 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 97 - -
Phac4g01443 160 MobiDBLite consensus disorder prediction 141 160 - -
Phac4g01443 160 CDD RRM_RBM18 15 93 IPR039157 -
Phac4g01443 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 95 IPR000504 GO:0003723
Phac4g01443 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01443 Phac-Chr4 39988724 39991179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01443 14 96 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 5.92e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01443 K24527 - gmx:100806572 277.33