Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01438 ATGCAGGATCCCAATATTGATGATAAGAGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCCTATGGCACACACGTGGCCCAAAACGCGGGGAACCACGTGGTTTTGCTTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTTGCCTGCGGCCGTCCACTGGTTGTTCGTCTTGCCGGTGAGAAGTGCTTGTTGGAAACAGCTGATAAGTCTACAAAAGCAGCAAGTGAAGGACAGAAGATGCTTCTCATTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAATTAAAATCCTTGGAGGAGGAGAGTTCTAGGACGAAGAAGCAGAAGCAAAATGGCAACATTTCTTGA 477 0.4298 MQDPNIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGQKMLLIGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQNGNIS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01438 158 Coils Coil 131 151 - -
Phac4g01438 158 SMART rrm1_1 13 89 IPR000504 GO:0003723
Phac4g01438 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Phac4g01438 158 MobiDBLite consensus disorder prediction 139 158 - -
Phac4g01438 158 CDD RRM_RBM18 13 91 IPR039157 -
Phac4g01438 158 Gene3D - 9 103 IPR012677 -
Phac4g01438 158 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 95 - -
Phac4g01438 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 86 IPR000504 GO:0003723
Phac4g01438 158 SUPERFAMILY RNA-binding domain, RBD 4 95 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01438 Phac-Chr4 39988724 39991179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01438 12 94 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 6.18e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01438 K24527 - gmx:100806572 277.33