Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01419 ATGCTAGACACATACTTAAATGTCTTGGCATTGGGACTTTTGTTTCTTCTTTTTGCTAGTTGGGTGGCATATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTATTCACTTCCTATGGTACTACGTTGTATCAAATGTTTCTTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCTCGTTGGTATGCCCTCTTCTTTGTACTGTTTGTGCTGGTGGGGGTTTACTTTGTTACAAACCTTATCCTTGCCGTTGTCTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTTGAAAAGGATCTCCAAAGAAGAACTGTGCTGGAGAAAGCTTTTAATCTCTTAGATACACATAATATTGGAGCTCTCAACAAAAATCAATGCATTAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGTGAAGAGTTTGAGCTGATATTTGATGAGCTGGATGATAGTCATGATATAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCAATTGCTTTAAAATTTCAAAAGGAAGATGTTATGTCTTACTTTGAGTATTTAGCGTTCTACCACTGGCCCAGCTCAAAGAGATTAAAAGAATTTGTAAAGAGTCCTATGTTTGGATACTTAGTGTCCTTCATTCTCATAGTAAACCTGGTTGCAGTTATTATTGAGACAACGCTTGATATAGAAAACAATTCTGGTCAAAAGCTGTGGCAAATGGTTGAGTTCGTTTTTGGGTGGATATATGTAGTAGAAATGCTTTTAAGGATTTATGCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTATTATCACGGTGATAATTGCCATTGGAGAAACTGTAACTTTTGCTGTACCTGATGATGCTCTTCCTTTTATCACAAATGGAGAGTGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGACTCCTAATGCATGTCAAGCGATACCGAGCCTTTGTGGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTCTGTCTTATGCATTTATTGTTCGCTTGGTGTACAGATTTTTGGTGGAATTGTTAATGCTGGAAACCCTGAATTGGAATCAACAGCTCTTGCCGAAAATGACTATTTGGTTTTCAATTTCAATGATTACCCGAATGGAATAGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGTTACAAGGAATTAACTGGGACTTCTTGGACCTATTTGTACTTCATTAGCTTCTACTTAATTACTGTTTTGCTGCTTCTGAACTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCATCAGAAAGTTCTGAAGGAACGGACAAGGATGTTGAAGGAGATAAGTATCGAAAACGGTCTATTGGCACTAAAACACGAAGCCAGAGGGTTGATACTCTTCTTCATCATATGTTGAGTGCCGAGTTGTGTCAAAATCAGCCTTCCAATACACAAACTTGA 1575 0.3765 MLDTYLNVLALGLLFLLFASWVAYVFFEDTIQGKTVFTSYGTTLYQMFLLFTTSNNPDVWVPAYKSSRWYALFFVLFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDLQRRTVLEKAFNLLDTHNIGALNKNQCIRLFEELNKYRTLPKISSEEFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVMSYFEYLAFYHWPSSKRLKEFVKSPMFGYLVSFILIVNLVAVIIETTLDIENNSGQKLWQMVEFVFGWIYVVEMLLRIYAYGFENYWRDGQNRFDFIITVIIAIGETVTFAVPDDALPFITNGEWIRYLLLARMLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFSVLCIYCSLGVQIFGGIVNAGNPELESTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYKELTGTSWTYLYFISFYLITVLLLLNLIIAFVLEAFFAEMDLESSESSEGTDKDVEGDKYRKRSIGTKTRSQRVDTLLHHMLSAELCQNQPSNTQT* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01419 524 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Phac4g01419 524 Gene3D - 344 503 - -
Phac4g01419 524 Gene3D - 98 182 - -
Phac4g01419 524 Pfam Ion transport protein 5 99 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac4g01419 524 Pfam Ion transport protein 218 464 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac4g01419 524 FunFam Two pore calcium channel protein 1 210 343 - -
Phac4g01419 524 FunFam Two pore calcium channel protein 1 1 101 - -
Phac4g01419 524 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 519 IPR044581 GO:0005245
Phac4g01419 524 Gene3D - 1 97 - -
Phac4g01419 524 FunFam Two pore calcium channel protein 1 344 501 - -
Phac4g01419 524 Gene3D - 209 343 IPR027359 -
Phac4g01419 524 SUPERFAMILY EF-hand 113 199 IPR011992 -
Phac4g01419 524 SUPERFAMILY Voltage-gated potassium channels 217 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01419 Phac-Chr4 37453424 37481017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01419 1 524 Ion Channels AT4G03560 68.762 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01419 K16900 - gmx:100806160 936.791