LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g01391	ATGACTCATGAGGATTGGGATCTCTTTGCCATCGTTCGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAAACACAGAAAACCCACCCACCATGACTTCCACCACCACTCCTTTCTCTCCAAACACTACCTCTTGCTTGGATGTCTGCCAAGACAATGGCTCATTCTCTTTTCCCAATCTTGTGCAGCCAACAACCAATGACTTTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCAACACCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGACGCTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTAGTTCCTGCTCCCACAAATCACTCCTCCATTGGAGCACCCTCCACCACTGGTTTTGACAGATTCCAACACCACCACCATCACCATCACCATCCCCACCACCAACAACAACATCAACCCCAAACCCCAGAACAACAGCAACACAAGCAAAACCAGCCACACCTTCAAGCACCTCAAACAAGTCCCACCCTTTCACCAACCACACAACCACAAACACCCAGATCAAGAAAGAGAAAAACCCAACAGAAGAAAATGGTGTGTCATGTAACCGCAGACAACCTCTCAGCAGATTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGTTCTCCATATCCAAGGAACTATTACAGGTGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCACCAACGAGCCCAACACGTTCATCGTCACCTACACCGGCGACCACAAACACGCCAAACCCGTCCACCGGAACTCCCTCGCCGGCAGCACCCGAACCAAGCCATCTCCGACCAGTTTAGCCGAAACCCATGAAGCTGTTTCTTGTAGCAAAATAGAAAACGCGTGTTCATCGACTTCTGAGCTTTCTACCACGTCGTTGAGGTCTGGCACGCCGGAAAACGAGGAAACGGTCGCCGCCGGCGAACCCGATTTCCTGGAGATGGAAGTTGACCCTGACGCGCTGTCTGAAAACGACTACGACCTTTTGATACCCAACACGGGTGCCATGTCAGACGCTGTTCTCTTGGGGTTAACCAATGAAGCTGAGACAAAGGCATCGGATCCGAATAGCGATTCCGGATTGACCCGGTCCAAATCCGACCCATTTTCTAACCCGGTGTAG	1212	0.4983	MTHEDWDLFAIVRSCKAATFTATTNTENPPTMTSTTTPFSPNTTSCLDVCQDNGSFSFPNLVQPTTNDFQELHQLLINFNPTNTTISSTITSAIGINPNSTFSDAAGFIGQQHIQQGHHHHLVPAPTNHSSIGAPSTTGFDRFQHHHHHHHHPHHQQQHQPQTPEQQQHKQNQPHLQAPQTSPTLSPTTQPQTPRSRKRKTQQKKMVCHVTADNLSADSWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTNEPNTFIVTYTGDHKHAKPVHRNSLAGSTRTKPSPTSLAETHEAVSCSKIENACSSTSELSTTSLRSGTPENEETVAAGEPDFLEMEVDPDALSENDYDLLIPNTGAMSDAVLLGLTNEAETKASDPNSDSGLTRSKSDPFSNPV*	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	376	403	-	-
	Phac4g01391	403	FunFam	WRKY transcription factor 22	199	270	-	-
	Phac4g01391	403	ProSiteProfiles	WRKY domain profile.	211	277	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac4g01391	403	SMART	WRKY_cls	216	276	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	159	196	-	-
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	114	207	-	-
	Phac4g01391	403	Pfam	WRKY DNA -binding domain	218	274	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phac4g01391	403	Gene3D	WRKY domain	199	270	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phac4g01391	403	SUPERFAMILY	WRKY DNA-binding domain	211	277	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	273	300	-	-
	Phac4g01391	403	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	5	355	IPR044810	GO:0003700
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	143	157	-	-
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	282	300	-	-
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	316	341	-	-
	Phac4g01391	403	MobiDBLite	consensus disorder prediction	379	403	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g01391	Phac-Chr4	36419327	36421237	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g01391	195	347	WRKY Transcription Factor Family	AT5G52830	57.516	1.26e-51	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Phac4g01391		WRKY	5.1e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g01391	-		-	gsj:114367469	471.085