Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01304 ATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGAGTTCACCACTGCAAACCTCAAGCTCCTGTGATTGTAATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCATTTAGATGGAGATGCAATTAGATTGGTTGTTGCTTCAAAGATTTGGATTGACCATAATACACTTTATGAATGTCAAGATGGTTTGCTTGATGTAACTCGAGGTTCTACTAATGTGACTATCTCCAATAACTGGTTCAAAAATCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGATAAGCATGAGACCTAG 318 0.3899 MIFKATNIIIHGIRVHHCKPQAPVIVMGPEGKVIPLGHLDGDAIRLVVASKIWIDHNTLYECQDGLLDVTRGSTNVTISNNWFKNQDKVMLLGHDDGYVRDKHET* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01304 105 Gene3D - 1 105 IPR012334 -
Phac4g01304 105 SMART amb_all 1 105 IPR002022 -
Phac4g01304 105 SUPERFAMILY Pectin lyase-like 2 98 IPR011050 -
Phac4g01304 105 PANTHER PECTATE LYASE 18-RELATED 1 103 IPR045032 GO:0030570
Phac4g01304 105 Pfam Pectate lyase 4 96 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01304 Phac-Chr4 32812123 32812545 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01304 1 102 Polysaccharide Lyase AT5G09280 70.588 9.60e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01304 K01728 - gmx:100780437 202.601