Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01279 ATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGAGTCAGTGTTTCAAGTGCCCCAAGTACTTCAAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTATCTGTGATAATATTAAAATTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGACAGATGTACTTCTCCCTAGACCGCTGGAAGCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATTTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCATGTGCTGTTACAATGGCTGGGGAACTATACACATGGGGTGATGGTACTCATAACGCAGGACTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGAGAGTTGTCGGTCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACTGCCTTGATAACTTCAACAGGGCAGCTGTTTACATTTGGTGATGGAACATTTGGTGTCCTAGGACATGGAGATAGGGAAAATGTTTCATATCCTAAAGAAGTGGAATCCTTGCGTGGACTGAGGACAATAGCTGTAGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACACTCCAGTACAAGTGTATCATCAGGTAAATTGTTTTCTTGGGGTGATGGAGACAAAAGTCGCCTCGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCCCTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTGGGCCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCGCAGTCTGATGGGAAGCTTCCATGCTTGGTTGGAGACAAGATTGCTGGGGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGTAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATCGAAAAACACCAGCTTTGATTGAAGCATTGAAGGATAGACATGTGAAATATATAGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTCTCTGGTGCCGAGCAGTCTCAGTGCTGTACTTGTAGACAGGCATTTGGCTTTACTAGAAAGAGGCATAATTGTTATAACTGTGGACTTGTCCACTGCCATTCGTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCTCCTAATCCCGGCAAACCATATCGTGTTTGTGATTCTTGTTATGTAAAATTGAACAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGCCTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGGCTAGACAAATCTGACCTAAGATTATCCAAGGCAATAGTTCCTTCTAATGTGGATTTGATAAAGCAACTAGATAATAAGGCAGCCAAGCAAGGAAAGAAAAGTGATACATTCTCACTGGTACGGACCTCACAACCACCTTCTCTGCTACAGCTGAAAGATGTTGTCTTGTCCACTGCTCTTGATCTGAGACGAACAGTTCCAAGACCAGTGGTTGCACCATCAGGAGTAAGTTCTAGATCTGTGTCACCTTTCTCTAGAAGACCAAGTCCCCCTCGTTCAGCTACGCCAATTCCAACAACTTCAGGACTTTCCTTCTCGAAAAGTATTGCTGAAAGTTTGAAGAAAACAAATGAGCTTTTAAATCAAGAAGTGCAGCAGTTACATGCTCAGGTTGAGGGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATGTCCCTGGCTGCCGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCGGAGAAGCTTCCTCCTGGAGTTTATGATGCTGAGAACATAAGACCAGCTTACCTACCAAATGGTCTTGATCCAAATGGCGTCCACTCTCCAGATTCAAATGGAGAGCAGCAGCACCCCAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTCGAATCCTCTCTACTGAATAGAACTGCACGGAATTCACCAGGAACTAATCTTCACCAGCAAATCCGGAGCCCTGTGACCTCTAATGGGACCAATAGTTATCCAGATGTTAAATTGCCAAATGGTGGTGGCTTAATTCAGGCAGGCAGCGGCAGCACAGCTTATGATGGTAGGGATTCTGGGAATTTTCACAATGACGAGAGTGGTCTGAAATCAAGGAATGCTGCACCTACTGCTAATACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTTGTGGCACTGCGTGATGGAACGAGAGATCTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTCGGAGAGCACCAAGCAGAAACCTGGTGGTCGGAGAACCGGGATAAGGTATATGAAAGATACAATGTTCGCAGTGCAGACAAATCTGCCAGCCAAGCGGCACGAAGTTCGGAAGGGGCTGGTTCACCTCTTTCCCAAACTTAG 2748 0.4443 MQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDNIKIGADKNVNYFSPRTDVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRVVGPLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPKEVESLRGLRTIAVACGVWHTAAVVEVIATHSSTSVSSGKLFSWGDGDKSRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCCTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYVKLNKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAIVPSNVDLIKQLDNKAAKQGKKSDTFSLVRTSQPPSLLQLKDVVLSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIAESLKKTNELLNQEVQQLHAQVEGLRQRCELQELELQRSAKKTQEAMSLAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDAENIRPAYLPNGLDPNGVHSPDSNGEQQHPRAESISGSSLASMGLESSLLNRTARNSPGTNLHQQIRSPVTSNGTNSYPDVKLPNGGGLIQAGSGSTAYDGRDSGNFHNDESGLKSRNAAPTANTNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKSASQAARSSEGAGSPLSQT* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01279 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 203 254 IPR000408 -
Phac4g01279 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 96 147 IPR000408 -
Phac4g01279 915 Coils Coil 622 663 - -
Phac4g01279 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 421 IPR000408 -
Phac4g01279 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 148 202 IPR000408 -
Phac4g01279 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 495 IPR013083 -
Phac4g01279 915 MobiDBLite consensus disorder prediction 582 615 - -
Phac4g01279 915 MobiDBLite consensus disorder prediction 757 785 - -
Phac4g01279 915 FunFam PH, RCC1 and FYVE domains-containing protein 1 256 427 - -
Phac4g01279 915 MobiDBLite consensus disorder prediction 893 915 - -
Phac4g01279 915 Gene3D - 10 252 IPR009091 -
Phac4g01279 915 Pfam Transcription factor BRX N-terminal domain 673 708 IPR027988 -
Phac4g01279 915 SUPERFAMILY FYVE/PHD zinc finger 422 497 IPR011011 -
Phac4g01279 915 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 189 199 IPR000408 -
Phac4g01279 915 MobiDBLite consensus disorder prediction 1 28 - -
Phac4g01279 915 SUPERFAMILY RCC1/BLIP-II 34 423 IPR009091 -
Phac4g01279 915 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Phac4g01279 915 Pfam Regulator of chromosome condensation (RCC1) repeat 96 144 IPR000408 -
Phac4g01279 915 Pfam Regulator of chromosome condensation (RCC1) repeat 317 366 IPR000408 -
Phac4g01279 915 Pfam Regulator of chromosome condensation (RCC1) repeat 203 251 IPR000408 -
Phac4g01279 915 Pfam Regulator of chromosome condensation (RCC1) repeat 371 418 IPR000408 -
Phac4g01279 915 Pfam Regulator of chromosome condensation (RCC1) repeat 148 199 IPR000408 -
Phac4g01279 915 Pfam FYVE zinc finger 422 488 IPR000306 GO:0046872
Phac4g01279 915 SMART fyve_4 420 489 IPR000306 GO:0046872
Phac4g01279 915 Gene3D - 253 435 IPR009091 -
Phac4g01279 915 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 18 693 - -
Phac4g01279 915 MobiDBLite consensus disorder prediction 1 27 - -
Phac4g01279 915 Coils Coil 671 698 - -
Phac4g01279 915 CDD FYVE_like_SF 431 484 - -
Phac4g01279 915 ProSiteProfiles BRX domain profile. 835 890 IPR013591 -
Phac4g01279 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Phac4g01279 915 MobiDBLite consensus disorder prediction 722 743 - -
Phac4g01279 915 MobiDBLite consensus disorder prediction 757 827 - -
Phac4g01279 915 MobiDBLite consensus disorder prediction 892 915 - -
Phac4g01279 915 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 241 251 IPR000408 -
Phac4g01279 915 MobiDBLite consensus disorder prediction 710 743 - -
Phac4g01279 915 PRINTS Chromosome condensation regulator RCC1 signature 307 325 IPR000408 -
Phac4g01279 915 PRINTS Chromosome condensation regulator RCC1 signature 98 114 IPR000408 -
Phac4g01279 915 PRINTS Chromosome condensation regulator RCC1 signature 148 164 IPR000408 -
Phac4g01279 915 PRINTS Chromosome condensation regulator RCC1 signature 205 219 IPR000408 -
Phac4g01279 915 PRINTS Chromosome condensation regulator RCC1 signature 365 386 IPR000408 -
Phac4g01279 915 PRINTS Chromosome condensation regulator RCC1 signature 189 205 IPR000408 -
Phac4g01279 915 FunFam Putative E3 ubiquitin-protein ligase HERC1 428 496 - -
Phac4g01279 915 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 426 488 IPR017455 -
Phac4g01279 915 Pfam Transcription factor regulating root and shoot growth via Pin3 834 889 IPR013591 -
Phac4g01279 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 95 IPR000408 -
Phac4g01279 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 317 IPR000408 -
Phac4g01279 915 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01279 Phac-Chr4 31758809 31769065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01279 836 906 Major Intrinsic Protein MIP AT1G31880 51.389 1.81e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01279 - - vum:124832279 1696.4