Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01275 ATGGCAAAGATAAGGGAGAAGCTATACGTCACCGTTCCGAGTCTCTTTCGGTGCCCAATTTCAATGGACGTGATGCGCTCCCCCGTAAGCCTCTGCACCGGCGTCACGTACGATCGCGCCAGCATTCAGCGTTGGCTTGACTCAGGAAACGATACGTGTCCCGCCACCATGCAGGTTCTTCCCTCTAAAGACTTCATCCCCAATCTCACCCTTCACCGCCTCATCCGCCTCTGGCTCCTCTCCGCGGACCCTCCTTCGCCGGAATCCTCCGCCGACAACCTCCGCTCTCTCCTCCGCCCAATCCAAACCGGGAACGATGACCTCGCCGGAACCCTCTCCAAAATCGCCGAATTCGCCTCAACCTCCGCCGAGAATCGTCGGAAACTCGCTTCCTTCCCCGGCTTCGACGCCGCCATCGTCCGCGCGCTGGCCGGATGCAGTTCGCGGATCGACGTGTCGGAAAACGCGATTTACCTTCTCGACTCGGTCCTCCGACAAAACGGAAATCCAGAGAAAGTCCGAAGGCTAATTCTCGACGCTCGCCAACAATGCTTTGATTCGATGCTTTTCGTTTTGCGAAACGGATCTGCAAAATCCAAGATTGAAACGGTTAGGGTTTTGGAGTTTCTCGCGCGCGATTTTCAGTCCTCGAAACCGATCGTAGAAACGCAAGGGCTGTTGTCTTTGTTAGTGGGATTTTTGAAGGACGGTGAAGAGGAGTTACGCGACGCCGTTTTGTTGTTTCTTGGAGTCGTTTCGGTGACTCGCTCCGCGAAGGTGGAGCTAGTTAATTGCGGTGTTGTCGAATTGGTTTCGAAATTGTTACAAGAGTGTTCGTCGGCGAAGATGGCGGAGAGGTGTCTGAGAGTGCTTGCGGTGGTGGCGACGTGCGCGGAGGGGAGGGCGGCGATGGTTGCGGAGCCTTCATGTGCAGCGGCGGTAGTGGAGAGAGTGACGAAGGCGGCGAAGGCCGCGGCGGAGGACGCGGTGATGGTGCTGTGGAGCTTGTGCTGTTTAAGCGGTAATGTGAAGGTTAGGGATGACGTGGCAAAGCGAAACGGCGTCGCAGTGATTTTATTGGCTATGCAGAGAGGGTGGGAGGAACACGTGAGGAGCATGTGTGTGGATTTGATTAAGGTTTTGAAGGGTGCGTGCAAGAACAACGGGTTAGGGTTGGAACTAGGAAGCTATGACACCAAAACCACTCATATCAAACCTTGCTAA 1224 0.5515 MAKIREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQRWLDSGNDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSADPPSPESSADNLRSLLRPIQTGNDDLAGTLSKIAEFASTSAENRRKLASFPGFDAAIVRALAGCSSRIDVSENAIYLLDSVLRQNGNPEKVRRLILDARQQCFDSMLFVLRNGSAKSKIETVRVLEFLARDFQSSKPIVETQGLLSLLVGFLKDGEEELRDAVLLFLGVVSVTRSAKVELVNCGVVELVSKLLQECSSAKMAERCLRVLAVVATCAEGRAAMVAEPSCAAAVVERVTKAAKAAAEDAVMVLWSLCCLSGNVKVRDDVAKRNGVAVILLAMQRGWEEHVRSMCVDLIKVLKGACKNNGLGLELGSYDTKTTHIKPC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01275 407 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Phac4g01275 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 86 IPR013083 -
Phac4g01275 407 Gene3D - 87 390 IPR011989 -
Phac4g01275 407 SUPERFAMILY RING/U-box 8 81 - -
Phac4g01275 407 FunFam RING-type E3 ubiquitin transferase 4 83 - -
Phac4g01275 407 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Phac4g01275 407 PANTHER WDSAM1 PROTEIN 9 387 IPR045185 GO:0061630
Phac4g01275 407 CDD RING-Ubox_PUB 13 65 IPR045210 -
Phac4g01275 407 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Phac4g01275 407 SUPERFAMILY ARM repeat 181 381 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01275 Phac-Chr4 31630516 31632479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01275 6 406 U-box Gene Family AT5G09800 39.036 1.47e-80 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01275 - - gmx:100786235 596.66