Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01233 ATGTCCTTCCGCAGTATTGTTCGTGATGTGAGGGACGGGATTGGAAGCTTGTCAAGGCGGAGTTTTGACTTGAGGCTTCCTGGCGGCAGCAAGTCGAATAGTTCGGTCCACGAGGTGCATGAACGCCCTCCGGTCATACAGAACAGCCGGTGGGCTAGCCTCCCACCTGAGCTTCTTCGTGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTGCTAGGAAGCACGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGGGCCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCACCTATTCCTTTGTCTGAGTCCTGCTTTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACTTGCACAGAGTATATTATATCAATGGATGCGGACAACATATCGAGATCCAGTAGCACTTACATTGGAAAACTGAGGTCCAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTACAACAATACTCAGCTGTCTCCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCCCCCAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGACCACGCAGGATGAACTGCAGCATGCACTCAATCCCTGTATCAGCCCTTGAGCCTGGTGGCACTGTGCCTGGCCAGCCAGAGCTTCTTCCCCGCTCTCTTGAAGATTCCTTCAGGAGCATATCCTTTGCTAGATCAATTTACAGCTCGACTGAGTTTAGCAGTTCTAGGTTCTCAGACATAGTTGTGGCAGGCAATGAAGAGGAGCAAGGAAAGGACATGCCTCTAGTTCTTAGAAACAAAGCACCACGATGGCATGAACAGCTGCAGTGTTGGTGCCTAAACTTCAGGGGAAGGGTGACAGTTGCATCTGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCGCCTGCAGCCGGTGCTCCTCCACCGCCGTCATCACAGCCAGCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAAGTTGGCAAGGACATCTTTACTATGGACTATAGATATCCCCTTTCTGCATTTCAGGCTTTTGCCATTTGTTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1278 0.4773 MSFRSIVRDVRDGIGSLSRRSFDLRLPGGSKSNSSVHEVHERPPVIQNSRWASLPPELLRDVIRRLEESETTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGAIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNTQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCSMHSIPVSALEPGGTVPGQPELLPRSLEDSFRSISFARSIYSSTEFSSSRFSDIVVAGNEEEQGKDMPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPPPPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01233 425 CDD F-box_AtTLP-like 51 95 - -
Phac4g01233 425 PANTHER TUBBY-RELATED 44 423 - -
Phac4g01233 425 Gene3D - 46 98 - -
Phac4g01233 425 FunFam Tubby-like F-box protein 46 99 - -
Phac4g01233 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Phac4g01233 425 Pfam F-box domain 51 97 IPR001810 GO:0005515
Phac4g01233 425 SUPERFAMILY Tubby C-terminal domain-like 100 425 IPR025659 -
Phac4g01233 425 SUPERFAMILY F-box domain 44 95 IPR036047 GO:0005515
Phac4g01233 425 ProSitePatterns Ribosomal protein L34e signature. 16 29 IPR018065 -
Phac4g01233 425 FunFam Tubby-like F-box protein 108 425 - -
Phac4g01233 425 Gene3D Tubby Protein; Chain A 108 425 IPR025659 -
Phac4g01233 425 Pfam Tub family 112 420 IPR000007 -
Phac4g01233 425 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Phac4g01233 425 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Phac4g01233 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Phac4g01233 425 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Phac4g01233 425 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Phac4g01233 425 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Phac4g01233 425 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Phac4g01233 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Phac4g01233 425 MobiDBLite consensus disorder prediction 207 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01233 Phac-Chr4 30091621 30095935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01233 1 425 TUB Transcription Factor Family AT1G76900 68.845 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phac4g01233 Tub 2.9e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01233 K19600 - gmx:100803729 763.066