Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01151 ATGGCGATACATTTATACAAAACTTCTACCCCAAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATCATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCCGTAATGCCAGAGGAATAATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTCAAATTGATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATATGACCCTAATCGAAATGCATCCATTTGTCTCATACACTATGGGGATGGTGAGAAAAAATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTTTATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCTGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTTGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGTCCGAATCATTTATTAAGAAAAATAAATAAGCTTAACACAAAAGCGGAAAAAGATATAATATTAACTTGGTCCAGAGCATCTACCATTATACCTACAATGATAGGCCATACCATTGCTATCCATAATGGAAAAGAACATTTACCTATTTATATAACAGATCGTATGGTAGGCCATAAATTAGGAGAATTTTCACCTACTCTAAACTTCCGAGGACATGCGAAAAATGATAATAGATCTCGTCGTTAA 1098 0.3998 MAIHLYKTSTPSTRNGAVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVFIDQKEESTSTDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRPNHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01151 365 FunFam 50S ribosomal protein L2, chloroplastic 116 207 - -
Phac4g01151 365 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 Pfam Ribosomal Proteins L2, C-terminal domain 145 262 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 SUPERFAMILY Ribosomal protein S19 284 357 IPR023575 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 Gene3D - 116 207 IPR014722 -
Phac4g01151 365 MobiDBLite consensus disorder prediction 236 266 - -
Phac4g01151 365 MobiDBLite consensus disorder prediction 1 22 - -
Phac4g01151 365 Pfam Ribosomal protein S19 284 356 IPR002222 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 Hamap 30S ribosomal protein S19 [rpsS]. 267 362 IPR002222 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 ProSitePatterns Ribosomal protein L2 signature. 229 240 IPR022671 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 Hamap 50S ribosomal protein L2 [rplB]. 1 286 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Phac4g01151 365 NCBIfam 30S ribosomal protein S19 286 365 IPR005732 GO:0003735|GO:0006412|GO:0015935
Phac4g01151 365 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 ProSitePatterns Ribosomal protein S19 signature. 326 350 IPR020934 GO:0003723
Phac4g01151 365 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Phac4g01151 365 SMART Ribosomal_L2_C_2 122 264 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 FunFam 50S ribosomal protein L2 207 287 - -
Phac4g01151 365 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Phac4g01151 365 Gene3D Ribosomal protein L2, domain 3 208 285 IPR014726 -
Phac4g01151 365 SUPERFAMILY Translation proteins SH3-like domain 145 284 IPR008991 -
Phac4g01151 365 Gene3D - 1 112 IPR012340 -
Phac4g01151 365 PANTHER RIBOSOMAL PROTEIN L2 36 286 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 NCBIfam 50S ribosomal protein L2 3 285 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Phac4g01151 365 PRINTS Ribosomal protein S19 family signature 306 325 IPR002222 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 PRINTS Ribosomal protein S19 family signature 326 338 IPR002222 GO:0003735|GO:0005840|GO:0006412
Phac4g01151 365 PRINTS Ribosomal protein S19 family signature 338 353 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01151 Phac-Chr4 24510748 24512565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01151 51 246 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 33.019 8.16e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01151 K02886 - cave:30215254 539.65