Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01149 ATGAAGCGAATATCTTCTCGAGGGAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAGCCAGCTTGGATAACATCTAGACAAATAGAAGCAGGACGGCGGGCAATGTCAAGAAATGTTCGCCGAGGTGGACAAATATGGGTACGCATTTTTCCAGACAAACCAGTGACAGTAAGACCTACTGAAACACGTATGGGTTCAGGAAAAGGATTTCCCGAATATTGGGTAGCTGTTGTTAAACCTGGGAAAATACTTTATGAAATGGCGGATAACAGCGGAGCACGTAAACTGATGTGTATTCGAATTCTAGGAGCTAGTAATCGACGATATGCTTATATTGGCGACATTGTTGTTGCTGTAATCAAACAAGCAGTACCAAATACGAACTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGGACTTGTAAACAACTAAAACGTAGCAACGGTATAATAATTCAGTATGATGATAATGCTGCAGTTGTAATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGACTAATACTTGA 612 0.402 MKRISSRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMADNSGARKLMCIRILGASNRRYAYIGDIVVAVIKQAVPNTNLERSEVIRAVIVRTCKQLKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPETNT* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01149 203 Hamap 50S ribosomal protein L14 [rplN]. 80 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 NCBIfam 50S ribosomal protein L16 4 92 IPR000114 GO:0003735|GO:0006412|GO:0019843
Phac4g01149 203 ProSitePatterns Ribosomal protein L14 signature. 140 166 IPR019972 -
Phac4g01149 203 Gene3D Ribosomal protein L14 78 201 IPR036853 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 CDD Ribosomal_L16_L10e 7 90 IPR016180 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 PANTHER 50S/60S RIBOSOMAL PROTEIN L16 3 98 IPR000114 GO:0003735|GO:0006412|GO:0019843
Phac4g01149 203 NCBIfam 50S ribosomal protein L14 89 200 IPR005745 GO:0003735|GO:0006412|GO:0015934
Phac4g01149 203 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Phac4g01149 203 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Phac4g01149 203 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Phac4g01149 203 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Phac4g01149 203 SMART Ribosomal_L14_2 86 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 SUPERFAMILY Ribosomal protein L14 90 200 IPR036853 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 Pfam Ribosomal protein L14p/L23e 89 200 IPR000218 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 Pfam Ribosomal protein L16p/L10e 3 94 IPR016180 GO:0003735|GO:0005840|GO:0006412
Phac4g01149 203 FunFam Ribosomal protein L14 134 202 - -
Phac4g01149 203 SUPERFAMILY Ribosomal protein L16p/L10e 2 92 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01149 Phac-Chr4 24507317 24508326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01149 91 198 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.714 5.93e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01149 K02874 - mtr:120580175 318.931