Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01100 ATGGAACATTTCAATTTCACTCTTCTTAATGGAAAACCCATTCGCATTATGTTTTCTCACCGTGATCCCAGTATTAGAAAAAGTGGATATGGAAATGTGTTCATTAAGAATCTGGATGCGGCAGTAGATAACAAGGCATTGTATGATACTTTTGCTGTCTTTGGAATTGTGTTATCTAGTAAGGTAGCAATTGATGACAATGGTCAATCTAAAGGGTATGGATTTGTCCAATTTGACAATGATGAATCTGCTCAAAATGCTATCAAAAAATTGAATGGCATGTTAATAAATGATAAGAAGGTATATGTCGGACTTTTTGTTCGAAGTCAGGAAAGGACTCCAACTAATGGATCATTGAAGTTCACTAATGTGTATGTGAAAAATTTTTCTGAAACCTATACTGAAGAAGACCTTAAGCAACTCTTTAATACCTATGGTACTATAACTAGTGTTGTGATAATGAAAGACGCAAAAGGAAAGTCCAAATGTTTTGGTTTTGTGAATTTTGAAAGTTCAGATTCAGCTGCTACTGCAGTTGAAAGGTTAAATGGAACAACAATCAACAACGACAAGGTTTTATATGTGGGGAGAGCTCAAAGGAAGTCAGAAAGAAAGGCAGAGTTGAAAGCTAAATTTGAACAGGAAAAAAGAAATAAATTTGATAAACTTCAAGATGCTAACTTGTATCTGAAAAACTTTGATAACAGTTTTACTGATGAAAAATTGAAAGAGATCTTTTCTGTGTTTGGAACAATAACATCTTGTAAGGTAATGGTTGATGCTCTTGGACGTAGTAAGGGTTGTGGTTTTGTTGCTTTCTCCAATCCAGAAGAAGCCACTAAAGCGATGAATGAAATGAATGGCAAGATAATTGGACAGAAGTCTCTCTACGTTGCAGTAGCTCAACGAAAAGAAGAAAGGAAGGCTAATCTACAGGCTCAGTTTTCTCATATGCAAATTGTAGCTACGGCTGGAATGACTGGATATCATCCAATGGGATCATTTCATCCTCATATGTATTTTGGTTCAGGAACATCTAGTTTTGTTTCACAAACAGGCTATGGTTTCCAACCCCATCTCTTACCACAGGGCATGCGAGGTGTTGCTCCAAATTTCATCATGCCATATCATCTTCAGGAACAAAGGATGAATCCTATTCGAAGAATTGGAAATAACCAGATCTCTTCCAACCAAGGAATTAGATACATGTCAAATGGTCAAAATGACATACATCACAATCTGGTGAATCCCTCACATGTTTCTGCATCTCCTACAAATATTAAGGATTCTGTTACATCATCTACTACGCTTGCTTCAACTTTGGCGTCCGCTGATTCTGAGAACCAACATAGGATATTGGGAGAACATTTATATCCACTGGTGGATCGTCTAGTCCCAAATCATCAGACTGCAAAGGTCACGGGGATGTTGCTTGAAATGGATCAATCTGAAGTTATCCATCTTATAGAATCTTCAGAAGATTTGAAGACAAAAGTGTCTGAGGCCATGAAGGTGCTTCGTGAGGCAGGACCAACTTCTGGAGTTGGTGATCAACTTGAGTTAGATGAGTGA 1572 0.374 MEHFNFTLLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDAAVDNKALYDTFAVFGIVLSSKVAIDDNGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVRSQERTPTNGSLKFTNVYVKNFSETYTEEDLKQLFNTYGTITSVVIMKDAKGKSKCFGFVNFESSDSAATAVERLNGTTINNDKVLYVGRAQRKSERKAELKAKFEQEKRNKFDKLQDANLYLKNFDNSFTDEKLKEIFSVFGTITSCKVMVDALGRSKGCGFVAFSNPEEATKAMNEMNGKIIGQKSLYVAVAQRKEERKANLQAQFSHMQIVATAGMTGYHPMGSFHPHMYFGSGTSSFVSQTGYGFQPHLLPQGMRGVAPNFIMPYHLQEQRMNPIRRIGNNQISSNQGIRYMSNGQNDIHHNLVNPSHVSASPTNIKDSVTSSTTLASTLASADSENQHRILGEHLYPLVDRLVPNHQTAKVTGMLLEMDQSEVIHLIESSEDLKTKVSEAMKVLREAGPTSGVGDQLELDE* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01100 523 Gene3D - 108 210 IPR012677 -
Phac4g01100 523 Gene3D - 211 315 IPR012677 -
Phac4g01100 523 Gene3D - 27 81 IPR012677 -
Phac4g01100 523 SUPERFAMILY PABC (PABP) domain 375 510 IPR036053 GO:0003723
Phac4g01100 523 SMART poly_2 445 509 IPR002004 GO:0003723
Phac4g01100 523 SUPERFAMILY RNA-binding domain, RBD 223 314 IPR035979 GO:0003676
Phac4g01100 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Phac4g01100 523 Gene3D - 4 103 IPR012677 -
Phac4g01100 523 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 433 511 IPR002004 GO:0003723
Phac4g01100 523 CDD RRM2_I_PABPs 29 104 IPR045305 -
Phac4g01100 523 FunFam Polyadenylate-binding protein 25 112 - -
Phac4g01100 523 FunFam Polyadenylate-binding protein 113 208 - -
Phac4g01100 523 PANTHER RNA BINDING PROTEIN 2 330 - -
Phac4g01100 523 SMART rrm2_1 227 299 IPR003954 GO:0003676
Phac4g01100 523 SMART rrm2_1 32 104 IPR003954 GO:0003676
Phac4g01100 523 SMART rrm2_1 123 195 IPR003954 GO:0003676
Phac4g01100 523 Coils Coil 198 218 - -
Phac4g01100 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 108 IPR000504 GO:0003723
Phac4g01100 523 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
Phac4g01100 523 CDD RRM4_I_PABPs 227 303 - -
Phac4g01100 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 101 IPR000504 GO:0003723
Phac4g01100 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 296 IPR000504 GO:0003723
Phac4g01100 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Phac4g01100 523 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 1 507 IPR006515 GO:0003723
Phac4g01100 523 SMART rrm1_1 32 104 IPR000504 GO:0003723
Phac4g01100 523 SMART rrm1_1 123 196 IPR000504 GO:0003723
Phac4g01100 523 SMART rrm1_1 227 299 IPR000504 GO:0003723
Phac4g01100 523 CDD RRM3_I_PABPs 121 201 - -
Phac4g01100 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 303 IPR000504 GO:0003723
Phac4g01100 523 FunFam Polyadenylate-binding protein 209 313 - -
Phac4g01100 523 SUPERFAMILY RNA-binding domain, RBD 120 206 IPR035979 GO:0003676
Phac4g01100 523 Pfam Poly-adenylate binding protein, unique domain 441 506 IPR002004 GO:0003723
Phac4g01100 523 Gene3D - 430 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01100 Phac-Chr4 20843494 20846294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01100 1 507 Eukaryotic Initiation Factors Gene Family AT1G22760 53.102 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01100 K13126 - gmx:100783163 672.159