Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01099 ATGGCCGCAATGATTTCTGCTCCTTTCACAAGTCCAACCACAATATTGAATGGCAATGCCACTTTATATGTTGGAGATCTCGATGTCAATGTGACAGAGAGTCAATTATTTGATCTGTTCAGTCAATCAGCTCATGTGATTTCAATTAGGGTTTGTCGGAATCAGACTAAAAGATCCTCTCTTGGTTATGCATATGTCAATTTTATGACTGCTCAAGATGCGGCTACTGCTATGGAACATTTCAATTTCACTCTTCTTAATGGAAAACCCATTCGCATTATGTTTTCTCACCGTGATCCCAGTATTAGAAAAAGTGGATATGGAAATGTGTTCATTAAGAATCTGGATGCGGCAGTAGATAACAAGGCATTGTATGATACTTTTGCTGTCTTTGGAATTGTGTTATCTAGTAAGGTAGCAATTGATGACAATGGTCAATCTAAAGGGTATGGATTTGTCCAATTTGACAATGATGAATCTGCTCAAAATGCTATCAAAAAATTGAATGGCATGTTAATAAATGATAAGAAGGTATATGTCGGACTTTTTGTTCGAAGTCAGGAAAGGACTCCAACTAATGGATCATTGAAGTTCACTAATGTGTATGTGAAAAATTTTTCTGAAACCTATACTGAAGAAGACCTTAAGCAACTCTTTAATACCTATGGTACTATAACTAGTGTTGTGATAATGAAAGACGCAAAAGGAAAGTCCAAATGTTTTGGTTTTGTGAATTTTGAAAGTTCAGATTCAGCTGCTACTGCAGTTGAAAGGTTAAATGGAACAACAATCAACAACGACAAGGTTTTATATGTGGGGAGAGCTCAAAGGAAGTCAGAAAGAAAGGCAGAGTTGAAAGCTAAATTTGAACAGGAAAAAAGAAATAAATTTGATAAACTTCAAGATGCTAACTTGTATCTGAAAAACTTTGATAACAGTTTTACTGATGAAAAATTGAAAGAGATCTTTTCTGTGTTTGGAACAATAACATCTTGTAAGGTAATGGTTGATGCTCTTGGACGTAGTAAGGGTTGTGGTTTTGTTGCTTTCTCCAATCCAGAAGAAGCCACTAAAGCGATGAATGAAATGAATGGCAAGATAATTGGACAGAAGTCTCTCTACGTTGCAGTAGCTCAACGAAAAGAAGAAAGGAAGGCTAATCTACAGGCTCAGTTTTCTCATATGCAAATTGTAGCTACGGCTGGAATGACTGGATATCATCCAATGGGATCATTTCATCCTCATATGTATTTTGGTTCAGGAACATCTAGTTTTGTTTCACAAACAGGCTATGGTTTCCAACCCCATCTCTTACCACAGGGCATGCGAGGTGTTGCTCCAAATTTCATCATGCCATATCATCTTCAGGAACAAAGGATGAATCCTATTCGAAGAATTGGAAATAACCAGATCTCTTCCAACCAAGGAATTAGATACATGTCAAATGGTCAAAATGACATACATCACAATCTGGTGAATCCCTCACATGTTTCTGCATCTCCTACAAATATTAAGGATTCTGTTACATCATCTACTACGCTTGCTTCAACTTTGGCGTCCGCTGATTCTGAGAACCAACATAGGATATTGGGAGAACATTTATATCCACTGGTGGATCGTCTAGTCCCAAATCATCAGACTGCAAAGGTCACGGGGATGTTGCTTGAAATGGATCAATCTGAAGTTATCCATCTTATAGAATCTTCAGAAGATTTGAAGACAAAAGTGTCTGAGGCCATGAAGGTGCTTCGTGAGGCAGGACCAACTTCTGGAGTTGGTGATCAACTTGAGTTAGATGAGTGA 1803 0.3771 MAAMISAPFTSPTTILNGNATLYVGDLDVNVTESQLFDLFSQSAHVISIRVCRNQTKRSSLGYAYVNFMTAQDAATAMEHFNFTLLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDAAVDNKALYDTFAVFGIVLSSKVAIDDNGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVRSQERTPTNGSLKFTNVYVKNFSETYTEEDLKQLFNTYGTITSVVIMKDAKGKSKCFGFVNFESSDSAATAVERLNGTTINNDKVLYVGRAQRKSERKAELKAKFEQEKRNKFDKLQDANLYLKNFDNSFTDEKLKEIFSVFGTITSCKVMVDALGRSKGCGFVAFSNPEEATKAMNEMNGKIIGQKSLYVAVAQRKEERKANLQAQFSHMQIVATAGMTGYHPMGSFHPHMYFGSGTSSFVSQTGYGFQPHLLPQGMRGVAPNFIMPYHLQEQRMNPIRRIGNNQISSNQGIRYMSNGQNDIHHNLVNPSHVSASPTNIKDSVTSSTTLASTLASADSENQHRILGEHLYPLVDRLVPNHQTAKVTGMLLEMDQSEVIHLIESSEDLKTKVSEAMKVLREAGPTSGVGDQLELDE* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01099 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 373 IPR000504 GO:0003723
Phac4g01099 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 92 IPR000504 GO:0003723
Phac4g01099 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Phac4g01099 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 268 IPR000504 GO:0003723
Phac4g01099 600 SUPERFAMILY RNA-binding domain, RBD 196 284 IPR035979 GO:0003676
Phac4g01099 600 SMART rrm1_1 200 273 IPR000504 GO:0003723
Phac4g01099 600 SMART rrm1_1 21 94 IPR000504 GO:0003723
Phac4g01099 600 SMART rrm1_1 109 181 IPR000504 GO:0003723
Phac4g01099 600 SMART rrm1_1 304 376 IPR000504 GO:0003723
Phac4g01099 600 Gene3D - 507 587 - -
Phac4g01099 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Phac4g01099 600 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 20 584 IPR006515 GO:0003723
Phac4g01099 600 SUPERFAMILY PABC (PABP) domain 452 587 IPR036053 GO:0003723
Phac4g01099 600 Gene3D - 12 108 IPR012677 -
Phac4g01099 600 CDD RRM3_I_PABPs 198 278 - -
Phac4g01099 600 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 510 588 IPR002004 GO:0003723
Phac4g01099 600 FunFam Polyadenylate-binding protein 102 189 - -
Phac4g01099 600 CDD RRM2_I_PABPs 106 181 IPR045305 -
Phac4g01099 600 Gene3D - 109 182 IPR012677 -
Phac4g01099 600 SUPERFAMILY RNA-binding domain, RBD 19 187 IPR035979 GO:0003676
Phac4g01099 600 CDD RRM4_I_PABPs 304 380 - -
Phac4g01099 600 SUPERFAMILY RNA-binding domain, RBD 300 391 IPR035979 GO:0003676
Phac4g01099 600 Gene3D - 285 389 IPR012677 -
Phac4g01099 600 PANTHER RNA BINDING PROTEIN 20 82 - -
Phac4g01099 600 Coils Coil 275 295 - -
Phac4g01099 600 FunFam Polyadenylate-binding protein 190 285 - -
Phac4g01099 600 Pfam Poly-adenylate binding protein, unique domain 518 583 IPR002004 GO:0003723
Phac4g01099 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Phac4g01099 600 SMART poly_2 522 586 IPR002004 GO:0003723
Phac4g01099 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Phac4g01099 600 SMART rrm2_1 21 94 IPR003954 GO:0003676
Phac4g01099 600 SMART rrm2_1 304 376 IPR003954 GO:0003676
Phac4g01099 600 SMART rrm2_1 109 181 IPR003954 GO:0003676
Phac4g01099 600 SMART rrm2_1 200 272 IPR003954 GO:0003676
Phac4g01099 600 FunFam Polyadenylate-binding protein 286 390 - -
Phac4g01099 600 Gene3D - 184 284 IPR012677 -
Phac4g01099 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01099 Phac-Chr4 20842554 20846294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01099 5 584 Eukaryotic Initiation Factors Gene Family AT1G22760 52.885 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01099 K13126 - gmx:100783163 761.525