Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01052 ATGGATACAAATGGGAGTCTACGTGCCAACACCTGGGCGAGGTCGTTGTCTTTAGCCTCGGATCCCATGTCATTCCCAGGTTTTGGTTTGCAGAATAATCAACCCAAATGGGATGACCCCTCAAATTCAGATTATGGGATCAGGGCAGAAGTACCTTTCAAAGAATTCAACCAGCCTTCTCAAACTCAGTCTCCACTTCCTTGCAACTCAAACAATGAGACTGAGATCCCTAATCAAGAAAACTGTCATCTGAATGAATCTTCACAAACCAATACACTCCAAGATTGGGACCCCAATGTGATGTTGAATAACCTGTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGTTCATCAAAAAGGCGTTGGACAACCTAATGAACTTGTAACTCAGGAACAGCAGCTCATCACAACTGATCTTACATCAATCATCATTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCATCTGTCAGGCACAACCTTGCAAATGCAGCTTCATTGTTTGGACAGATTGATCAGCTTCGTGGGACAACGGTTCCTTCTGGGACTGGTGGAAGTAGCAGCTGTATTCAGCCACAAAATAATGGTGCAAAAAAAATGTCTGATCAGTCCATGCAAACTGATCTACCAAATAATTGTGAAATGGAGCCAAACTACAATATGGCAGAACAAGAACTCAAAGATGAAGAAGATGTAGATGATGGAGAAAACCTTGCCCCTGGTTCCTATGAGATTCTACAATTAGAGAAGGAAGAAATCCTTGCCCCTCATACCCATTTCTGTACAATTTGTGGCAAGGGGTTCAAGAGAGACGCAAATCTCCGAATGCACATGCGTGGTCACGGTGACGAGTACAAAACCCCAGCAGCTCTTGCAAAACCGCACAAAGATTCCGGGTCACCAAAGCTCATCAAGAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATCCTATGTGTCAAAAACCATTACAAAAGGACACATTGTGACAAGAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAGGGCCATACTCCAGCCATTCCCTTGGATGACAATAAAGGGGTAGCTGAGCCACCCAATCATGACAGCAAAGAAAACAGTAAGGTGGGGAATATGAACTTCACTTTTGGATCAAGTCCCTCAAATGGAAATGAAGTTGAAAATATGATGGATGTAAAAGGCAATAATAGTGATGATCCTATTAGTTTTTTCTCGTCATTGAACTTTGACACCAGCTTTGGTGGGTTTAATGAATTCACTAGACCTCTATTTGATGACTCAGAAGGCTCATTCTCTTTTGTCATGCCCGGATCTTTCAAATCTGGAGGAGAATCGAGTGCTGACAATCTTTTGTAA 1539 0.4276 MDTNGSLRANTWARSLSLASDPMSFPGFGLQNNQPKWDDPSNSDYGIRAEVPFKEFNQPSQTQSPLPCNSNNETEIPNQENCHLNESSQTNTLQDWDPNVMLNNLSFLEEKIHQLQDLVHLIVHQKGVGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLANAASLFGQIDQLRGTTVPSGTGGSSSCIQPQNNGAKKMSDQSMQTDLPNNCEMEPNYNMAEQELKDEEDVDDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKDSGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNKGVAEPPNHDSKENSKVGNMNFTFGSSPSNGNEVENMMDVKGNNSDDPISFFSSLNFDTSFGGFNEFTRPLFDDSEGSFSFVMPGSFKSGGESSADNLL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01052 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 293 IPR013087 -
Phac4g01052 512 Gene3D Classic Zinc Finger 250 316 - -
Phac4g01052 512 MobiDBLite consensus disorder prediction 185 212 - -
Phac4g01052 512 MobiDBLite consensus disorder prediction 57 78 - -
Phac4g01052 512 ProSitePatterns Zinc finger C2H2 type domain signature. 268 288 IPR013087 -
Phac4g01052 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 78 487 IPR044300 GO:0010044|GO:0010447
Phac4g01052 512 SUPERFAMILY beta-beta-alpha zinc fingers 264 291 IPR036236 -
Phac4g01052 512 SMART c2h2final6 352 374 IPR013087 -
Phac4g01052 512 SMART c2h2final6 314 347 IPR013087 -
Phac4g01052 512 SMART c2h2final6 266 288 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01052 Phac-Chr4 15778573 15781572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01052 233 512 C2H2 Transcription Factor Family AT1G34370 67.347 2.04e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac4g01052 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01052 - - gmx:100500526 926.776