Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01041 ATGTTTAAATATGAAGACATTGTACAATTGGAATGGCTGTCAAATTTTGTTGAGGACTCTTTCTCTGGTGGAAGTCTCACCATGCAGCAGGAGCAGCCACAATGCACCAACAAGGAGGACATAACTCATGCCCAATTCCAGACAGCAAGTCCAGTCTCAGTCCTTGAAAGCAGCAGTTTCTGTTCTGGAGAGAAGGCTGTACCTCGTAGCCCGGAGATTTACATCCCCGTGCCATGTGGACGTGCACGCAGCAAGCGTGCACGTCCGACAGCCTTCAATCCCCATCCAGTGATGCAGCTGATCTCGCCGGCGTCTTCCACCGGCGAGAACACGCAGCACAACACCACCACCTCCAAGGCCTCCTCAGACTCTGAGAATTTTGCCGAGTCCACTATCAAGACACCAAAGCAGGCCTTTGGTGAGCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCTCTGCAGGTCAAGACCAGAATGGTGCACCATCACAGGCAGTGAGAAAATGTGTGCACTGTGAGATAACCAAGACACCGCAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGGCGGCTCTTCCCTGAATACCGGCCAGCTGCCAGTCCAACGTTCTGCGCAGCTGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGAAACAAGACAGACACCAAATCTGGTTTTGCAGCAGATTCAGCTGCCTCACCAGAACTGATTCCAAACACTAACAGTAGCCTTTCCCTGGAATACATGTGA 792 0.5126 MFKYEDIVQLEWLSNFVEDSFSGGSLTMQQEQPQCTNKEDITHAQFQTASPVSVLESSSFCSGEKAVPRSPEIYIPVPCGRARSKRARPTAFNPHPVMQLISPASSTGENTQHNTTTSKASSDSENFAESTIKTPKQAFGEHKKKKKIKVTFSAGQDQNGAPSQAVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTDTKSGFAADSAASPELIPNTNSSLSLEYM* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01041 263 Gene3D - 163 213 IPR013088 GO:0006355|GO:0008270
Phac4g01041 263 ProSiteProfiles GATA-type zinc finger domain profile. 163 199 IPR000679 GO:0006355|GO:0043565
Phac4g01041 263 CDD ZnF_GATA 168 215 IPR000679 GO:0006355|GO:0043565
Phac4g01041 263 Pfam GATA zinc finger 169 202 IPR000679 GO:0006355|GO:0043565
Phac4g01041 263 PANTHER GATA TRANSCRIPTION FACTOR 7 246 - -
Phac4g01041 263 SMART GATA_3 163 213 IPR000679 GO:0006355|GO:0043565
Phac4g01041 263 ProSitePatterns GATA-type zinc finger domain. 169 194 IPR000679 GO:0006355|GO:0043565
Phac4g01041 263 MobiDBLite consensus disorder prediction 102 127 - -
Phac4g01041 263 FunFam GATA transcription factor 158 246 - -
Phac4g01041 263 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01041 Phac-Chr4 15556072 15557951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01041 5 238 C2C2-Gata Transcription Factor Family AT4G32890 40.833 3.86e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac4g01041 GATA 7.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01041 - - var:108344313 474.937