LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g01028	ATGGCTAAGCATGATGTTGAGGGTGGTTCCTTCTCTGCAAAGGACTACCATGACCCTCCTCCAGCACCCTTGATTGATGCTCAGGAACTCACACAGTGGTCCTTCTACAGGGCCTTGATTGCTGAGTTCATTGCCACACTGCTCTTCCTTTACATCACAGTGCTCACCGTCATTGGTTACAAGAGCCAGAGTGATGTCAAGGCTGGGGGTGATCTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGAGGTCACATAAACCCAGCAGTGACTTTTGGACTCTTCTTGGCTCGGAAGGTGTCTTTGATAAGGGCTATAATGTACATGGTGGCTCAGTGCTTGGGGGCTATATGTGGAGTTGGGTTGGTTAAGGCCTTCCAAAAGGCTTACTACAACAGGTATGGTGGTGGGGCCAATGAGCTGAGTGAAGGGTACAGCACAGGTGTTGGATTGGGTGCTGAGATCATTGGAACCTTCGTTTTGGTGTACACTGTCTTCTCTGCTACCGACCCCAAGAGGAATGCTAGAGATTCTCATGTACCGAAAAGTGGATTCTTTGAGGAGTTTCCTTCTGCATTTTTTGCCTCAGAAGCAAATGTGTCTTTGTTGATGTGGAAATTTAAGGCCTAA	684	0.4854	MAKHDVEGGSFSAKDYHDPPPAPLIDAQELTQWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDVKAGGDLCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYNRYGGGANELSEGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPKSGFFEEFPSAFFASEANVSLLMWKFKA*	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac4g01028	227	PRINTS	Major intrinsic protein family signature	171	189	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac4g01028	227	PRINTS	Major intrinsic protein family signature	85	109	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac4g01028	227	PRINTS	Major intrinsic protein family signature	122	141	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac4g01028	227	PRINTS	Major intrinsic protein family signature	37	56	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac4g01028	227	Gene3D	Glycerol uptake facilitator protein.	22	213	IPR023271	-
	Phac4g01028	227	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	4	199	IPR034294	-
	Phac4g01028	227	SUPERFAMILY	Aquaporin-like	28	197	IPR023271	-
	Phac4g01028	227	Pfam	Major intrinsic protein	29	198	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Phac4g01028	227	ProSitePatterns	MIP family signature.	103	111	IPR022357	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g01028	Phac-Chr4	15421152	15425113	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g01028	1	199	Major Intrinsic Protein MIP	AT2G37170	84.000	3.59e-120	343

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g01028	K09872		-	gmx:547857	396.356