Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00996 ATGAACGACCTTCTAACGGAATCATTTGAAATCCCGCGTGGCCACGGAGGTGGTGACATTGAGTTAGGAGAATATGCGAGGAATTCAGGAGAACTGGGCTTGGAAAGTTTCTTCAGAAAGGTTCAAGAGCTTGATAAGCAATATGCTAAACTGGATAAGCTTTTGAAAAATCTCCAGGATGCCCATGAGGAAGCCAAAGCTGTAACTAAGGCTCCTTCCATGAAGGCTTTAAAGCAGAAAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCATATTACATAAAAACCAGAATTGAAGAATTGGACAAAGAGAATTTGGCAAACAGGCAGAAGTCTGGATGCGGAAAAGGTTCAGGTGTTGACCGCTCAAGAACAGCAACAACCATTTCTTTAAAAAAGAAACTAAAAGATAAAATGGCAGTTCAGGAACAAGGGCGAGGCCAGATAATGAACGCCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGATGTTGAGAGAAAGCTTCTTGAGCTACAACAGATATTTCTGGATATTGCGGTGTTAGTGGATGCACAAGGAGACATGCTTGACAACATCGAAACACAGGTTTCAAGTGCAGTCGATCACGTGCAGCAAGGTAACAAAGCCCTCCTAACGGCCAAGAAACATCAAAAGAACTCTAGAAAATGGATGTGTGTTGCAATCTTGATACTTCTCATCTTTATTATAATCACTGTTATCACTGTCATCAAACCATGGGCTAGCAAAAATGGTGCATAA 768 0.4115 MNDLLTESFEIPRGHGGGDIELGEYARNSGELGLESFFRKVQELDKQYAKLDKLLKNLQDAHEEAKAVTKAPSMKALKQKMEKDVDEVKKTAYYIKTRIEELDKENLANRQKSGCGKGSGVDRSRTATTISLKKKLKDKMAVQEQGRGQIMNALAEIQERHEAVRDVERKLLELQQIFLDIAVLVDAQGDMLDNIETQVSSAVDHVQQGNKALLTAKKHQKNSRKWMCVAILILLIFIIITVITVIKPWASKNGA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00996 255 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Phac4g00996 255 Pfam Syntaxin 36 141 IPR006011 GO:0016020
Phac4g00996 255 ProSitePatterns Syntaxin / epimorphin family signature. 160 199 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phac4g00996 255 SUPERFAMILY t-snare proteins 33 209 IPR010989 GO:0016020|GO:0016192
Phac4g00996 255 Gene3D - 33 146 - -
Phac4g00996 255 SMART SynN_4 29 155 IPR006011 GO:0016020
Phac4g00996 255 SMART tSNARE_6 149 216 IPR000727 -
Phac4g00996 255 PANTHER SYNTAXIN 37 235 IPR045242 -
Phac4g00996 255 Gene3D - 147 247 - -
Phac4g00996 255 FunFam Syntaxin 132 147 247 - -
Phac4g00996 255 Pfam SNARE domain 190 242 IPR000727 -
Phac4g00996 255 Coils Coil 34 71 - -
Phac4g00996 255 CDD SNARE_syntaxin1-like 153 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00996 Phac-Chr4 14701761 14708859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00996 1 255 SNARE and Associated Proteins AT3G03800 58.170 2.79e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00996 K08486 - gmx:100306329 379.793