Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00993 ATGGAAATTCAGTTCCAACATCCAAAGCAGCACTTGAGACCAAAACTCAAAGGAAGAAACAACAAAAGCAAGAACAAGTATGTTGGAGTGAGGCAAAGGGCATCAGGGAAATGGGTTGCTGAGATCAAAGAAACAACACAAAAGATAAGAATGTGGCTTGGCACTTATGAGACAGCAGAAGAAGCAGCAAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCTAACACTCGCACCAACTTCATCACACGTGTGTCCTCTGATTCCCCTCTTGCTTCACGGATTCAGAAGCTTCTCAACAACAGAAAAGACATCAAAGAACAAGAACAAGATGTGGAAAACTGTGCCACAAGGGTCAACACCAACCAACAGGAGTTGAATCTTGCAGAAGGAGTTACTACCCTACAAGATGAGAAACTAAGGTTCGAATCTTCGCTGGAAGAAGTGTCTATATTTAGTGTCCAACCTTGTCTCCAACAAGATTGTCGTCAAAAGAAGATATATGTGAAAAATCAGAAGAAAAAAAGGGTTACCAGCACAACAAGAAGTGCTAGTGCTAGTGCCAGTAGTAGTACTAACACAAGCAACAGTGACACATGTGTTAACTCACTTTCGAGCGAGACAACAACCCAAAACTCACAACTATTTGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGAGTCTGAGTCAGGTTCTCAGGAAAATCCTTCATGGGGTTCTGAACCCTTTTGTGATCATTTTCCCTTTGGCCAAGTAATGGATTTAGAAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGAGTTTGAAAGGATGAAGGTTGAAAGGCAAATTTCAGCTTCACTTTATGCAATGAATGGTGTGCAAGAGTACATGAACACTGTTCAAGACTCTAACCATGAAGCTATCTGGAATCTTACTCCCTTGTGCTCATTTTTGTGTTAA 954 0.4172 MEIQFQHPKQHLRPKLKGRNNKSKNKYVGVRQRASGKWVAEIKETTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSSDSPLASRIQKLLNNRKDIKEQEQDVENCATRVNTNQQELNLAEGVTTLQDEKLRFESSLEEVSIFSVQPCLQQDCRQKKIYVKNQKKKRVTSTTRSASASASSSTNTSNSDTCVNSLSSETTTQNSQLFDDAYRPDLSNFMESESGSQENPSWGSEPFCDHFPFGQVMDLENLPDIAGLELPEFERMKVERQISASLYAMNGVQEYMNTVQDSNHEAIWNLTPLCSFLC* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00993 317 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Phac4g00993 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 281 - -
Phac4g00993 317 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Phac4g00993 317 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Phac4g00993 317 MobiDBLite consensus disorder prediction 179 216 - -
Phac4g00993 317 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Phac4g00993 317 CDD AP2 26 82 IPR001471 GO:0003700|GO:0006355
Phac4g00993 317 Coils Coil 96 126 - -
Phac4g00993 317 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Phac4g00993 317 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Phac4g00993 317 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677
Phac4g00993 317 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Phac4g00993 317 MobiDBLite consensus disorder prediction 1 25 - -
Phac4g00993 317 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00993 Phac-Chr4 14689081 14690592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00993 8 101 AP2-EREBP Transcription Factor Family AT5G19790 69.149 4.00e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac4g00993 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00993 K09286 - gmx:100792432 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01550 1 19600367 19601695 Phac4g00993 4 14689081 14690592 PCT