Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00953 ATGGAGAATGACATGGAAGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAACCCAATTAGTGATGCTGAGAACATATGCCCATTTTGCGAGACAGAGTTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTATTGACTTGAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATTTTTCTTGGTTTGATGGGTGCTTTCAGTCCTTCTCTAGCAAGGATTGCTCCACATGGAGGTAGCAGCTCAAGGGGGGAGGAAGAAGAGGTTGAGCAACAGATGGAAAATGAGCTTGTGCTTGGAAGAAGAAGAAGAACTTCATCCTACATGATGCATCTTTTCCGGGGACTTCATGTGAGGATGGTGTCTGAATTTGAAAACCTTGAAGACAATAGGAACATGGATAGCAGCAGCATACTTGTGATTGATCCATTCAATGAAGGTGCCCTTATTGTGAGAGGCCCTAACTTGAACCACACAAGTAGTCCAAATGAGAATAATGTAGTTGGAAGCTCCCTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTACTACAACACTTGGCACAGATTGGTCCTGGTGGGTATGCTAGTGTGAACCCTCCAGCACAGAAGGCAGCAATTGAAGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTGCAGTGCACAGTATGCTTGGAGGATGTTGAGGTCGGGATTGAGGCAAAGGAGATGCCATGCAAGCATAAGTTTCATGATGATTGCATTGTCTCATGGCTCAAACTTCATGGTTCTTGTCCAGTATGCAGGTTTCAGATGCCATATGAGGATCCAAATGTTGAAGCCAATGTGGGAATTGGAAATGGCAATCAAAACAGTGAGCTAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTGCAATCATTTAGCAATTTTCTTCCTTCTCCCTGA 966 0.4451 MENDMEGVHWCNICSKMVNPISDAENICPFCETEFSEVMDNLRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSRGEEEEVEQQMENELVLGRRRRTSSYMMHLFRGLHVRMVSEFENLEDNRNMDSSSILVIDPFNEGALIVRGPNLNHTSSPNENNVVGSSLNDLVVGSGFDLLLQHLAQIGPGGYASVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEVGIEAKEMPCKHKFHDDCIVSWLKLHGSCPVCRFQMPYEDPNVEANVGIGNGNQNSELVRAGEERPRNGRRNWFPVLQSFSNFLPSP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00953 321 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Phac4g00953 321 Pfam Ring finger domain 225 267 IPR001841 -
Phac4g00953 321 FunFam E3 ubiquitin-protein ligase RNF181 198 273 - -
Phac4g00953 321 SUPERFAMILY RING/U-box 216 273 - -
Phac4g00953 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 273 IPR013083 -
Phac4g00953 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 271 - -
Phac4g00953 321 SMART ring_2 226 266 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00953 Phac-Chr4 14073719 14075250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00953 90 285 C3H Transcription Factor Family AT1G26800 31.156 6.04e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00953 - K11982 gmx:100790855 579.711