Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00848 ATGGTGCCGCAGAAGCCGAGTTTCTCCTCCTTCTTCGAGGCCAACGGGAACGGTTTTCTCGACGGTGGGTTTGATTTCGGTGCGGAGAGCTGTTTCTTAGCAGCGGATGGAGCGGTGGCGGGAGGCCGGGATTTGGAGGAATTGGAGCTTCCGCCTCCGGCGGCGGAGGTGGCCGAGAGGAGGAGGAAGAGAGAGGATGAGGAAGGGTTGAATTATGAGTCTGATGAGTATGGGAAGTTGTTGGAGAATGTTTTTTATGCAAATGATAACGATGATAATGAGAACAGAGTTGGTGGTGGAGACCAGAAGGGAAAGAAGAAGGGGAAGCCGGCAAAGAATCTCATGGCTGGGAGAAGGCGGAGGAAGAAACTGAATGATAGGTTGTACATGCTTAGGTCTATTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCCATTGACTACCTGAGGGAGTTACTACAGCAGATTAATGATCTTCATAAGGAACTAGAGACAAGTAAGCTTGACTCATCCCTTCCACCTTCTGCCAGCTTTCACCCTGTGACACCCACTGTGCCTACCCTTCCTTGCCGGGTGAAGGAAGAACTATGTGCTACCACTCTGCCAAGTCCTAAAAATCAATCAGCGAAGGTATTTCGTGATCGAGATGAGCTGTTAGAGTGGGCGAGAAGTGTTGGCTATAGTTATGGGTTTGTTATTGTTATATTAAGGTTGGATACATGGACGAGGCAACGAGGAAGGATGACGTACGTATTGTTAGGTTGTGAGAGATGA 789 0.4892 MVPQKPSFSSFFEANGNGFLDGGFDFGAESCFLAADGAVAGGRDLEELELPPPAAEVAERRRKREDEEGLNYESDEYGKLLENVFYANDNDDNENRVGGGDQKGKKKGKPAKNLMAGRRRRKKLNDRLYMLRSIVPKISKMDRASILGDAIDYLRELLQQINDLHKELETSKLDSSLPPSASFHPVTPTVPTLPCRVKEELCATTLPSPKNQSAKVFRDRDELLEWARSVGYSYGFVIVILRLDTWTRQRGRMTYVLLGCER* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00848 262 Gene3D - 101 173 IPR036638 GO:0046983
Phac4g00848 262 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 67 217 - -
Phac4g00848 262 SMART finulus 114 163 IPR011598 GO:0046983
Phac4g00848 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 171 IPR036638 GO:0046983
Phac4g00848 262 FunFam BHLH transcription factor 104 172 - -
Phac4g00848 262 CDD bHLH_AtAMS_like 111 183 - -
Phac4g00848 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Phac4g00848 262 MobiDBLite consensus disorder prediction 89 112 - -
Phac4g00848 262 Pfam Helix-loop-helix DNA-binding domain 117 157 IPR011598 GO:0046983
Phac4g00848 262 Coils Coil 154 174 - -
Phac4g00848 262 MobiDBLite consensus disorder prediction 94 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00848 Phac-Chr4 11227713 11234032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00848 69 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 62.914 6.20e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac4g00848 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00848 - - pvu:PHAVU_004G070200g 319.316