Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00846 ATGAGTACCAACCAAAACACCACCTTCTTCCCCACCCCACATGGTCAAATAACCAGTACTTCTAAATTTATTAATAGCCAGGATCCATCTCAAGCTACAAATCAAGGTAATGCTGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAAAGACCTTGGGGGAAATGGGCAGCTGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCTATGGCTTATGATGTTGCGGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAACGTGTTGCTGTGCCACTACCACCACCAGCCAACAACACCACTTCTTCAGCTTCTGCACAACGCTCTTCCCTCACACCACCACATCTTGGTGGCCATCATCAAACTCTACAAACCAGTGGCAGTAGTTCTCTTGTAGTGTCACCAACATCAGAAGAAGCAGAAGGGTTTCCGAGTCTGATGGAGTATGCACGGTTGCTGAAATGTAGGGATGATGATGATTTCCAACGTGTTGCATTGGGGCTTTACCAGCACCATCCCAATGAGGAACTTCTCTACGGTTCTTCTCAGCCACCACCAGTGCCATTTTTTCTGTCTTCTTCGTCTTCTTCTGCATTTGCATCTTCAACTTCTCAGGGTGATGTTGGAGGCTATGGTTCTTCTGGATTCTATAGTCATGGAGGGAGTGGTTTTGATGAAGGGAACATGAGGGGATCATAG 744 0.4597 MSTNQNTTFFPTPHGQITSTSKFINSQDPSQATNQGNADIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDVAALKFKGNKAKLNFPERVAVPLPPPANNTTSSASAQRSSLTPPHLGGHHQTLQTSGSSSLVVSPTSEEAEGFPSLMEYARLLKCRDDDDFQRVALGLYQHHPNEELLYGSSQPPPVPFFLSSSSSSAFASSTSQGDVGGYGSSGFYSHGGSGFDEGNMRGS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00846 247 PANTHER DNA-BINDING DOMAIN 30 147 IPR044808 GO:0003700|GO:0009873
Phac4g00846 247 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Phac4g00846 247 MobiDBLite consensus disorder prediction 1 46 - -
Phac4g00846 247 MobiDBLite consensus disorder prediction 110 151 - -
Phac4g00846 247 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
Phac4g00846 247 MobiDBLite consensus disorder prediction 106 152 - -
Phac4g00846 247 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Phac4g00846 247 MobiDBLite consensus disorder prediction 213 247 - -
Phac4g00846 247 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Phac4g00846 247 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Phac4g00846 247 MobiDBLite consensus disorder prediction 1 38 - -
Phac4g00846 247 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Phac4g00846 247 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Phac4g00846 247 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Phac4g00846 247 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00846 Phac-Chr4 11148767 11151296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00846 25 147 AP2-EREBP Transcription Factor Family AT5G61890 57.143 2.33e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac4g00846 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00846 - - gmx:100806383 279.256