Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00828 ATGAGTTCCTACAAGTCATCGCCATCGTCCTCCAAGACCAAAAAGAAGCAAACCACAACACAAGACCATCAACAACATGAAACGGTTTGGGGAGGGAGGTACCTTGGTGTGAGAAGGAGGCCATGGGGAAGGTATGCGGCGGAAATTCGCGACCCTTCCACCAAGGAGAGACATTGGTTGGGCACGTTTGATACAGCAGAAGAAGCTGCTCTGGCTTACGACAGAGCGGCGCGTTCCATGCGCGGGTCACGTGCCCGAACCAATTTCGTTTATCCGGATACTCCGGCGGGTTCCTCCGTCACCACCATCCTCTCCCCTGACGAACAAACTCAAACCCAAATTCAAATCCATCAGGTCCAAGAAGACCTCTCGTCTTTACTAAACCCGAACCTGTTTTCACAGTCTGACCCAAACCCGCCATTTTCCTTGGGCGGATACTCGGGTGTTACGAACACTCCCACGTTTTCTTCCACCGAAGTTGTTTCATCCGGTGGCTATAACTATAATTATGGTTACACCGAAGGAGGAAGCACCGTGGAAGATTCACATTCACATTCACATTTTAATCTCTTTGATGACGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATGGCCTATGAGACGGGCCATGGGTTTTATGGAGACGGTGTTGGGTTTTCGGATCCAAGTTTTAGTTTGACTGATACCGGATCGGGTTACCCGTTTCCGGGGTTTGAATCGGGTGATTACGTGGTGCATAGTCCTCTTTTTAGTGCAATGCCACCAGTGTCAGATAACGTGGCAATGGAGGGTTTTGATCTGGGAAACTCTTCTTATTTCTTCCGAAATTAG 846 0.4965 MSSYKSSPSSSKTKKKQTTTQDHQQHETVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPAGSSVTTILSPDEQTQTQIQIHQVQEDLSSLLNPNLFSQSDPNPPFSLGGYSGVTNTPTFSSTEVVSSGGYNYNYGYTEGGSTVEDSHSHSHFNLFDDGETQLPPLPPDITSSMAYETGHGFYGDGVGFSDPSFSLTDTGSGYPFPGFESGDYVVHSPLFSAMPPVSDNVAMEGFDLGNSSYFFRN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00828 281 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 118 - -
Phac4g00828 281 MobiDBLite consensus disorder prediction 1 15 - -
Phac4g00828 281 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Phac4g00828 281 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Phac4g00828 281 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Phac4g00828 281 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Phac4g00828 281 MobiDBLite consensus disorder prediction 1 32 - -
Phac4g00828 281 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Phac4g00828 281 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Phac4g00828 281 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Phac4g00828 281 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Phac4g00828 281 FunFam Ethylene-responsive transcription factor 2 33 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00828 Phac-Chr4 10846308 10847596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00828 9 271 AP2-EREBP Transcription Factor Family AT5G13910 45.833 3.61e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac4g00828 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00828 K09286 - gmx:100815668 399.053