Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00816 ATGGCTAGTGATCTTAGAACGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTACTCCACAATATAGAAGCAGCAGGATATTACATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTAATGGGCAAAAACATGCTCGTTTTGGCGGATACGGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCAATAGTTTCTCGTTGTGTGATTCATCGCAGACAATATGTTTCAGAGAAGAAGCCTTTGGTTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAGATGCTCGGCAAGGGATTGCCTTTCAAAACTGCACTTGTGGTTGGTGGTGAGGCCATGGCTGGACAACTCTATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGACTTGTTGATCTTCTAATGAAGCATGAAATCGACTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGCTTTAGAGATCAGGTCATGCAGATATATAGGGCTCTGTCACAACCCCAGGTCTTGATGTATTCTGCGACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTGGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATAGAGCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGTTGTTTGACATTTTGGCAACTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTGGGCTCCAGACTTGGGGCAGATCTTCTGGCTAATGCAATCACAGTTGCCACGGGAATTAAAGCTGTTTCAATTCATGGGGAGAAGTCTATGAAGGACAGGAGAGAAATAATGCAATCTTTTTGTATGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTAGGCAGGGGGATAGATCTGCTGGGTGTAAGACAGGTGATTGTATTTGACATGCCTAATTCCATTAAGGAATATGTGCATCAAATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAATAAAAATGTGTTTGCAGACTTGATCGATGTTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTACACCACAGGATTTTTCTCTGGCGGGAAGGCTTCGAAAAAGAGAAAGAATACAAGATGA 1266 0.4392 MASDLRTKLDIHVKGDVVAPVLSFSACNLPDKLLHNIEAAGYYMPTPVQMQAIPAALMGKNMLVLADTGSGKSASFLIPIVSRCVIHRRQYVSEKKPLVMVLTPTRELCIQVEEHAKMLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLMKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNRANKAVKQLAIWVESKQKKQKLFDILATKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKDRREIMQSFCMGEVPVVVATGVLGRGIDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFADLIDVLKSGGAAVPRELANSRYTTGFFSGGKASKKRKNTR* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00816 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 377 IPR027417 -
Phac4g00816 421 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Phac4g00816 421 SMART helicmild6 281 363 IPR001650 -
Phac4g00816 421 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Phac4g00816 421 Pfam Helicase conserved C-terminal domain 253 363 IPR001650 -
Phac4g00816 421 SMART ultradead3 41 243 IPR014001 -
Phac4g00816 421 Gene3D - 229 404 IPR027417 -
Phac4g00816 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 230 IPR027417 -
Phac4g00816 421 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 20 389 - -
Phac4g00816 421 Gene3D - 2 228 IPR027417 -
Phac4g00816 421 Pfam DEAD/DEAH box helicase 46 216 IPR011545 GO:0003676|GO:0005524
Phac4g00816 421 CDD SF2_C_DEAD 240 372 - -
Phac4g00816 421 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 402 IPR001650 -
Phac4g00816 421 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 228 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00816 Phac-Chr4 10329235 10331945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00816 23 383 Eukaryotic Initiation Factors Gene Family AT1G72730 32.514 2.97e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00816 K19466 - gmx:100784491 755.362