Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00748 ATGGAGATGAGCAGCATTTGGATGAGGCATGGAAACAAATATTCTTATATGACCATTATAGGGAAAGGCAGACAGAAGTACCCTACCAAAATTGCAAACCAGCCGTCTTCCCTTTGTTGCTCTCTTCACCTCACCATTCAAGGAGGGAATTCCTTTTCCTATTTCAACATGGATAACCAATTGTTTTCTACCCAGAATAAGAACTTCGAGGAGGGGTTGGCCAGTGGCGATTCAAATTCTTGTCCCGTTCAAATAGGGACAAATGGGAAATCTTGCCACCAATGCCGGCAAAAGAAAGAGGATTTTGCTGCAACATGCAAGAACTTGAAGAAAGGGAAGCCTTGTCCGATTAAGTACTGCCACAAGTGCCTCTTGACTAGGTATGGGGAGAATGCTGAAGAAGTGGCACATTTGGCTGATTGGACATGTCCGAAGTGTCGAGGGTTTTGCAACTGCAGCTTATGCCAGAAAAAACGAGGTGAGCAACCTACTGGTCCCCTATATCGCAATGCCAAAGAATCTGGTTTTAAGTCTGTGGCGGAAATGCTTGCCGTTAAGAAGACTATAGAAGCTTCAGGATTAAATAAGGAGCTTGAAGTACATCTCTCGGGGGAATTTGGGAAACAAAATTGTACAGATACAAATGATACTAAAGTTTGCAACAAAGAGTATGATGGAGGTGATAATGTTGGTGCCATGATCCAAGGAGAGAGCAAAATAATTGAGGAGGAAATTCTTTTGCCCCCTGGAACAGAGTTAAAAGAAATACTTGGTATTGAGTTACCACTCAAAGAAGTTGGGAATGCATTGCAACTCTTAGAGTTTTGCAAAGTATTCGGAAAGGCTCTTGATCTCAAGGAAGGAGGAGCTGAAGCCATGCTAGAAGAATTAGTATGTAAACAAAGCATGCATGCACAAAACAACTTACTGGTTGAATTTCATATTAGAGTGTTGGATTTGATCCTAAACAATTCGGGAAATGAGTCTCCTAGGGATGAAAATAATTCATGGTTGAAACATCTGGAGGATTTAATCATGAAATCGTATCATATACTAAATGATTTTCCTTTGGATTGGCTTCAAGAAGGCATCAGTGGATATTATAAGTTGGATTTGTCTCAAAAGTTTAAACTGATGACTTTTCTCTGTGACGAAGCTCTGAATACTGAGAAATTGAGGAGCTATATTCATGAGGAAAATTCAAGACATGAAAAAGAAGTGAAAGAAGCAAAACACAAGGTTGCTGCAACCAAGGAAAAGGTAAAGTGTCTTCAGAAGAAGTTGCGGAGTGAGAAAGCCAAAGTTGTTCCTTCAACTGTGTCTCCCTATCCGATGGAGGAGCATGAGACTCTTCTTTCGAAAATAAGAATTGAGGTTGATGAAGCACACACTGAGATGCTTGGATTAAAGGGCACAACTCGAAAAGCGAAACTAGGTTGTGATGCTTTGAGGATCAAACCTGAATTTGTGGACAATAATGGTAAAGCATTCTGGAATTTTAGAAGTTGCAGTAGTGAATGTACTGTTTTTTTGCAAGAAATTAAAATACAGGATGAAATTGCCAAAGCACCAGAAGAAAAGTGGTATGTTTATGGTCCTGACAAGAAGGAAGAGGTTCATAAATATATTTCCACAAGGTGGGTTCTTTTCTTAAATTTCTAG 1662 0.3983 MEMSSIWMRHGNKYSYMTIIGKGRQKYPTKIANQPSSLCCSLHLTIQGGNSFSYFNMDNQLFSTQNKNFEEGLASGDSNSCPVQIGTNGKSCHQCRQKKEDFAATCKNLKKGKPCPIKYCHKCLLTRYGENAEEVAHLADWTCPKCRGFCNCSLCQKKRGEQPTGPLYRNAKESGFKSVAEMLAVKKTIEASGLNKELEVHLSGEFGKQNCTDTNDTKVCNKEYDGGDNVGAMIQGESKIIEEEILLPPGTELKEILGIELPLKEVGNALQLLEFCKVFGKALDLKEGGAEAMLEELVCKQSMHAQNNLLVEFHIRVLDLILNNSGNESPRDENNSWLKHLEDLIMKSYHILNDFPLDWLQEGISGYYKLDLSQKFKLMTFLCDEALNTEKLRSYIHEENSRHEKEVKEAKHKVAATKEKVKCLQKKLRSEKAKVVPSTVSPYPMEEHETLLSKIRIEVDEAHTEMLGLKGTTRKAKLGCDALRIKPEFVDNNGKAFWNFRSCSSECTVFLQEIKIQDEIAKAPEEKWYVYGPDKKEEVHKYISTRWVLFLNF* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00748 553 Coils Coil 445 465 - -
Phac4g00748 553 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 366 396 IPR028942 -
Phac4g00748 553 Coils Coil 400 434 - -
Phac4g00748 553 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 87 183 IPR018866 -
Phac4g00748 553 Pfam DDT domain 265 323 IPR018501 -
Phac4g00748 553 ProSiteProfiles DDT domain profile. 263 327 IPR018501 -
Phac4g00748 553 SMART testlast3 263 327 IPR018501 -
Phac4g00748 553 PANTHER OS05G0300700 PROTEIN 87 456 IPR040221 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00748 Phac-Chr4 9229082 9240249 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phac4g00748 zf-4CXXC_R1 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00748 - - pvu:PHAVU_004G063200g 781.556