Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00711 ATGGGTCGTGCAAGAATAACTTTAAAACACATCTCAAATGAAAAATCTCGCAAGACAACTTTCTTGCGAAGAAAGAAAGGACTAATGAAGAAGATCTCTGAATTTTCCAAGAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGGGATGTTGGGCCACTGACTTCACCCCAAAACCCTGTAGAGGTACATTCCATGATTCAAAAGTATTATGAAAGTCAAATAAAGAATGAGAGACCTCACAAGACTTATGGTATTGATGAGTTTCTTGAGAATAGGAAAAACATGATTGAAGTTGAGATTTCTAGAGTGGATAAACAGATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGACAAACATGGAAGAGGATCAATTGAGGGCCTTTTGTGCTCATGTGGATGCTAAAATTGAAGCTTGTGATAAGGGAATTAAACTGTTGAAGGAAAAGCCTCAAGGTTTTGTGCCAAACATGGCTCAGGAAAATACTACCGCTACCACCTCACATCCAAACCAAGTCAATTACTTGCAAAGCATCTCTCAAAGTGAAGCCGTTCTTGATGATTTCTTGAAGCAACTTAATGATAAGAATTATGGAATGGTAGATTTTAGTAATACAGTTGATGTGCCACTAAATTCAACCAATAAACTTAGTGACTTGGAGTTTGAGGAATGGATTATGGGACTTAGTAGTTGTGATTGGCCTTATCAAGCATGTGATGATCCTGTGGGTTGTAACAATGAAGCTGATGAATCTGTCTTGCCAAGTATTTGTGCTCAATATCAAAATGAACAGCAAGGAGGAGGAGATTTGCATGCTTTGCCACCATCATTGGATGTATTTCAAACAAATTACTATAACATGTTTTTTTAA 891 0.3737 MGRARITLKHISNEKSRKTTFLRRKKGLMKKISEFSKKCGGEHCLIVFDDDNGDVGPLTSPQNPVEVHSMIQKYYESQIKNERPHKTYGIDEFLENRKNMIEVEISRVDKQISSIKYPTWDPSMTNMEEDQLRAFCAHVDAKIEACDKGIKLLKEKPQGFVPNMAQENTTATTSHPNQVNYLQSISQSEAVLDDFLKQLNDKNYGMVDFSNTVDVPLNSTNKLSDLEFEEWIMGLSSCDWPYQACDDPVGCNNEADESVLPSICAQYQNEQQGGGDLHALPPSLDVFQTNYYNMFF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00711 296 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Phac4g00711 296 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Phac4g00711 296 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Phac4g00711 296 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Phac4g00711 296 PANTHER MADS BOX PROTEIN 3 129 - -
Phac4g00711 296 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Phac4g00711 296 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac4g00711 296 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00711 Phac-Chr4 8718647 8719537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00711 1 144 Type I MADS-box Gene Family AT5G55690 33.784 7.28e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac4g00711 SRF-TF 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00711 - - pvu:PHAVU_004G060500g 508.834