Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00709 ATGGGTCGTGCAAGAATAACTTTAAAACACATCTCAAATGAAAGATCTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGACTAATGAAAAAGATCTCTGAATTTTCAAAGAAGTGTGGTGGTAAGCATTGTTTGATTGTGTTTGATGATGATAATGGGGATGTTGGGCCAATGACTTCACCCCAAAATCCTGTAGAGATACATTCCATGATTCAAAAGTATTATGAAAGTCAATTAAAGAATGGGAGACCTCACAAGACTTATGGTATAGATGAGTTTCTTGAGAACAGGAAAAACATGATTGAGGTTGAGATTTCCAGAGTGGATAGACAGATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGACAAACATGGAAGAGGATCAATTGAGGGCCTTCTGTGCTTATGTGGATGCCAAAATTGAAGCTTGTGATCAAGGAATTAAATTGTTGAAGAATAAGCCTCAAGGTTTTGTGCCAAACATATCTCAGGAAAATATTACCTGCAAAGCATCTCTCAAAGGGAAGTCCTTCTTGATGATTTCTTGA 555 0.3766 MGRARITLKHISNERSRKTTFLRRKRGLMKKISEFSKKCGGKHCLIVFDDDNGDVGPMTSPQNPVEIHSMIQKYYESQLKNGRPHKTYGIDEFLENRKNMIEVEISRVDRQISSIKYPTWDPSMTNMEEDQLRAFCAYVDAKIEACDQGIKLLKNKPQGFVPNISQENITCKASLKGKSFLMIS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00709 184 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Phac4g00709 184 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Phac4g00709 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Phac4g00709 184 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Phac4g00709 184 PANTHER MADS BOX PROTEIN 3 128 - -
Phac4g00709 184 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Phac4g00709 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac4g00709 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00709 Phac-Chr4 8703895 8704513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00709 1 144 Type I MADS-box Gene Family AT5G55690 31.757 8.79e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac4g00709 SRF-TF 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00709 - - pvu:PHAVU_004G061500g 313.538