Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00707 ATGGAGAGGCTCTCACACCGTCAAATAATCTCAACTCCAATCCAAGAACTTAACAATGGGATGGTAGATTTTACAAATTCAATAAATCAAGAAAATGTTACTGCTACCACCTCACATCCAAGCCAAGTCAATTACTTGCAAATCATCTCTCAACGTGAACCCCTTCTTGATAATTTCTTGAAGCAACTTAATAATGAGAATTATGGAATGATAGATTTTAGTAATCCAGTTGATGTGCCACTAAATTCAAGCAATGAACTTAGTGACTTGAAGTTTGAGGAATTGATTATAGGACTTAGTAGTTGTGATTGGCCTTATCAAGCTTGTGATGAATTTGTGGGTTGTAGCATTGAATCCGATGAATATGTCTCGCCAAGTGTTTGTGTTGACTATCAAAATAAGCAACAAGGAGGAGGAGATTTGCATGCCTTGCTGCCGACACCACTGGATAAAATGGGTCGTGCAAGAATAACTTTAAAGCACATCTCAAATAAAAAATCTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGACTGATGAAGAAGATCTCTGAATTTTCCAAGAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGGGATGTTGGGCCAGTGACTTCACCCCAAAACCCTGTAGAGGTAAATTCTATGATTCAAAAGTATTATGAAAGTCAAATAAAGAATGAGAGACCTCACAAGACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAAGTTGAGATTTCTAGAGTGGATAAACAGATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGACAAACATGGAAGAGGATCAATTGAGGGCCTTTTGTGCTCATGTGGATGCTAAAATTGAAGCTTGTGATCAGGGAATTAAACTGTTGAAGGAAAAGCCTCAAGGTTTTGTGCCAAACATGACTCAAGAAAATGCTATTGCTACCACCTCACATCCAAACCAAGTCAATTACTTGCAAAGCATCTCTCAAAGCGAAGCCCTTCTTGATGATTTCTTGAAGCAACTTAATGATAAGAATTATGGAATGGTAGATTTTAGTAATACAGTTGATGTGCCACTAAATTCAACTAATGAACTTAGTGACTTGGAGTTTGAGGAATTGATTATGGGACTTAATAGTTGTGATTGGCCTTATCAAGCATGTGATGATCTTGTGGGTTGTAGAAATGAAGTTGATGAATCTATCTTGCCAAGTATTTGTGTTGAATATCAAAATGAGCAGCAAGGAGGAGGAGATTTGCATGCCTTGCCACCACCACTTGATAAAATGGGTCGTGCAAGAATAACTTTAAAACACATCTCAAATGAAAAATCTCGCAAGACAACTTTCTTGCGAAGAAAGAGAGGATTGATGAAGAAGATCTCTGAATTTTCCAAGAAGTGTGGTGGTGAACACTGTTTGATTGTGTTTGATGATGATAATGGGAATGTTGGGCCAGTGACTTCACCCCAAAACCCTGTAGAGGTACATTCCATAATTCAAAAGTATTATGAAAGTCAAATAAAGGATCTGAGACCTGACAAGACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATTGAGGTTGAGATTTCCAGAGTGGATAAACAGATTAGCAACATCAAGTATCCAACTTGGAATCCAAGTATGATAAACATGGAAGAGGATCAATTGATGGCCTTCTGTGCTCATGTTGATGCCAAAATTGAAGCTTGTGATCAGGGAATTAAATTGTTGAAGAATAAGCCTCAAGGTTTTGTGCCAAACATGGCTCAGGAAAATGCTACTGCTACCACCTCACATCCAAACCAAGTCAATTACTTGCAAAGCATCTCTCAAAGTGAAGCCCTTCTTGATGATTTCTTGAAGCAACTTAATGATAAGAATTATGGAATGGTAGATTTTAGTAGTGCAGTTGATGTGCCACTAAATTCAACCAATGAACTTAGTGATTTGGAGTTTGAGAAATTGATTATGGGACTTAGTAGTTGTGATTGGCCTTATCAAGCATGTGATGATCTTGTGGGTTGTAGCAATGAAGTTGATGAATCTCTCTTGCCAAGTATTTGTGTTGAATATCAAAATAAGCAGCAAGGAGGAGGAGATTTGTCTGTCTTACCACCATCACTAAATAAAATGGGTCGTGCAAGAATAACCTTAAAACACATCTCAAATGAAAGATCTCGCAAGACAACTTTCTTACGAAGAAAGAGAGGAGTAATGAAGAAGATCTCTGAATTCTCAAAGAAGTGTGGTGGTGAGCACTGTTTAATTGTCTTTGATGATGATAATGGGGATGTTGGGCCAGTAACTTCACCCCAAAACCCTGTAGAGATACATTCCATGATTCAAAAGTATTATGAAGGTCAATTAAAGAATGGGAGACCTCCCAAGACTTATGGTATAGATGAGTTTCTTGAGAACAGGAAAATCATGATTGAGGTTGAGATTTCCATAGTGGATAAACAGATTAGCAGCATCAAGTATCCAACTTGGGATCCAAGTATGACAAACATGGAAGAGGATCAATTGAGGGCCTTTTGTGCTCATGTGGATGCCAAAACTGAAGCTTGTGATCAAGGAATTAAATTGTTGAAGAATAAGCCTCAAGGTTTTGTGCCAAACATGTCTCAGGAAAATACTACCGCTACCACCATACATCCAAACCAAGTCAATTACTTGCAAAGCATCTCTCAAAGCGAAGTCCTTCTTGATGATTTCTTGAATCAACTTAATGATAAGAATTATGGAATGGTAGATTTTAGTAATACAATTGATGTGCCACTAAATTCAACCAATGAACTTAGTGACTTGGATTTTGATGAATGGATTATGGGACTTAGTAGTTGTGATTGGTCATATCAAGCATGTGATGATCCTGTGGGTTGTAGCAATGAAGCTGATGAATCTGTCTTGCCAAATATTTGTGCTCAATATCAAAATGAAGAGCAAGGAGGAGAAGATTTGCATACCTTGCCACCATCATTGGATAAAATGGGTCGTGCAAGAATAACCTTAAAACACATCTCAAATGAAAGATCTCGCAACAGAACTTTCTTGCGAAGAAAGAGAGGACTAATGAAGAAGATCTCTGAATTTTCTAAGAAGTGTGGTGGTGAGCACTGTCTGATTGTTTATGATGATGGTAATGGGGATGTTGGGCCAGTGACTTCACCCCAAAACCTTGTAGAGGTGCATTCCATGATTCAAAAGTATTATGAAATTCAATTAAAGAATGAGAGACCTCACAAGACTTATGGTATTGAAGAGTTTCTTGAGAATAGGAAAAACATGATGGAGATTGAGATTTCCAAAGTGCATAAACAGATCCAAGTATGA 3372 0.3763 MERLSHRQIISTPIQELNNGMVDFTNSINQENVTATTSHPSQVNYLQIISQREPLLDNFLKQLNNENYGMIDFSNPVDVPLNSSNELSDLKFEELIIGLSSCDWPYQACDEFVGCSIESDEYVSPSVCVDYQNKQQGGGDLHALLPTPLDKMGRARITLKHISNKKSRKTTFLRRKRGLMKKISEFSKKCGGEHCLIVFDDDNGDVGPVTSPQNPVEVNSMIQKYYESQIKNERPHKTYGIEEFLENRKNMIEVEISRVDKQISSIKYPTWDPSMTNMEEDQLRAFCAHVDAKIEACDQGIKLLKEKPQGFVPNMTQENAIATTSHPNQVNYLQSISQSEALLDDFLKQLNDKNYGMVDFSNTVDVPLNSTNELSDLEFEELIMGLNSCDWPYQACDDLVGCRNEVDESILPSICVEYQNEQQGGGDLHALPPPLDKMGRARITLKHISNEKSRKTTFLRRKRGLMKKISEFSKKCGGEHCLIVFDDDNGNVGPVTSPQNPVEVHSIIQKYYESQIKDLRPDKTYGIEEFLENRKNMIEVEISRVDKQISNIKYPTWNPSMINMEEDQLMAFCAHVDAKIEACDQGIKLLKNKPQGFVPNMAQENATATTSHPNQVNYLQSISQSEALLDDFLKQLNDKNYGMVDFSSAVDVPLNSTNELSDLEFEKLIMGLSSCDWPYQACDDLVGCSNEVDESLLPSICVEYQNKQQGGGDLSVLPPSLNKMGRARITLKHISNERSRKTTFLRRKRGVMKKISEFSKKCGGEHCLIVFDDDNGDVGPVTSPQNPVEIHSMIQKYYEGQLKNGRPPKTYGIDEFLENRKIMIEVEISIVDKQISSIKYPTWDPSMTNMEEDQLRAFCAHVDAKTEACDQGIKLLKNKPQGFVPNMSQENTTATTIHPNQVNYLQSISQSEVLLDDFLNQLNDKNYGMVDFSNTIDVPLNSTNELSDLDFDEWIMGLSSCDWSYQACDDPVGCSNEADESVLPNICAQYQNEEQGGEDLHTLPPSLDKMGRARITLKHISNERSRNRTFLRRKRGLMKKISEFSKKCGGEHCLIVYDDGNGDVGPVTSPQNLVEVHSMIQKYYEIQLKNERPHKTYGIEEFLENRKNMMEIEISKVHKQIQV* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00707 1123 SMART madsneu2 438 498 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 SMART madsneu2 152 212 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 SMART madsneu2 724 784 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 SMART madsneu2 1010 1070 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 SUPERFAMILY SRF-like 1010 1088 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 SUPERFAMILY SRF-like 724 798 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 SUPERFAMILY SRF-like 152 229 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 Gene3D - 1022 1109 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 Gene3D - 450 513 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 Gene3D - 164 227 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 Gene3D - 736 799 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 734 775 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1020 1060 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 448 490 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 162 203 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 ProSiteProfiles MADS-box domain profile. 724 775 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 ProSiteProfiles MADS-box domain profile. 1010 1061 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 CDD MADS_SRF_like 439 513 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac4g00707 1123 SUPERFAMILY SRF-like 438 518 IPR036879 GO:0003677|GO:0046983
Phac4g00707 1123 ProSiteProfiles MADS-box domain profile. 152 203 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 ProSiteProfiles MADS-box domain profile. 438 489 IPR002100 GO:0003677|GO:0046983
Phac4g00707 1123 CDD MADS_SRF_like 153 227 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac4g00707 1123 PANTHER MADS BOX PROTEIN 440 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00707 Phac-Chr4 8670087 8692706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00707 724 867 Type I MADS-box Gene Family AT5G55690 31.081 2.79e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac4g00707 SRF-TF 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00707 - - pvu:PHAVU_004G060500g 505.753