Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00687 ATGGCTTCCCTTTCATGCTTCCTTCTCTTTGCTCTTTCTCTTCTCACACCCTCTTTTGTTTCCTCCTCCACACTTCCAGACCCTGAATTGGTTGTTCAAGAGGTACAAAGAAGTATCAATGCCTCTAGGAGAAACTTGGGTTATTTATCATGCGGAACCGGGAACCCCATCGACGACTGCTGGCGGTGCCGCCCTAACTGGGAGAACAACCGCCAGAGACTAGCCGACTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGAAGAAACGGTCGAATCTACGAGGTCACAGACTCCGGCGACGACGACGCCGTGAACCCAAAGCCCGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTAATCACGCTAAAACAAGAGCTTCTGGTGAACTCTTTCAAGACAATCGACGGCAGAGGCGCCAGTGTGCACATCGCTGGTGGCGGCTGCATCACCATACACTACGTCAGCAACGTGATTATTCACGGAATTCACATTCACGATTGCAAGCCCACGGGGAACACCAACATCAGAGACTCGCCGGAGCACTCGGGGTTTTGGACGCAATCGGACGGCGATGGAGTGTCCATCTTCAACTCGAAGCATGTTTGGATCGATCATTGCTCTCTGTCCAATTGTCGTGATGGGCTCATTGATGCCATTCATGGATCCACTGCCATCACCATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACGCAGGACAAGGACATGCAGGTCACTATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCAAGATGCAGACACGGGTATTTTCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCCATTGGAGGGAGTGCGAACCCCACCATAAACAGCCAAGGAAACAGGTTTCTTGCCCCAAACATAAGATTCAGCAAAGAGGTAACAAAGCATGAGGATGCTCCACAGAGTGAGTGGATGAGTTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACCATCACTGCTGGTGCACTTACCTGTAGAAAGGGAAACCGTTGCTGA 1212 0.505 MASLSCFLLFALSLLTPSFVSSSTLPDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCRPNWENNRQRLADCAIGFGKDAIGGRNGRIYEVTDSGDDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIIHGIHIHDCKPTGNTNIRDSPEHSGFWTQSDGDGVSIFNSKHVWIDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTITAGALTCRKGNRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00687 403 Pfam Pectate lyase 136 320 IPR002022 -
Phac4g00687 403 Gene3D - 54 396 IPR012334 -
Phac4g00687 403 SMART amb_all 129 326 IPR002022 -
Phac4g00687 403 FunFam Pectate lyase 54 396 - -
Phac4g00687 403 SUPERFAMILY Pectin lyase-like 38 397 IPR011050 -
Phac4g00687 403 PANTHER PECTATE LYASE 18-RELATED 20 401 IPR045032 GO:0030570
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Phac4g00687 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00687 Phac-Chr4 8478300 8481953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00687 4 403 Polysaccharide Lyase AT5G63180 74.752 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00687 K01728 - gmx:100810380 790.03