LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac4g00646	ATGGAGAAGATGGCAACTACATTCCCACCCGTCAGAGATCCAAGGTCCGGTTTCAATCCCGCTTCCGGAACCTTCCACAGCCTCAAACCACCACTTATTCTCCCTCCTCCCAACGCCACCATCTCCGCCGCTTCCTACATCCTCTTCCTCCGTCGCAACTCGCACTTTCCGGACTCCTCTACCGCCGTTATCGACTCAACCTCCGGCCACCGTCTCTCCTACGAAGAACTCATCCACCGCGCTGAGAACCTAGCCGCCAACCTCGCAACAGTTCTCAAACTATCAAAATCTCACACCGCGCTCGTTCTCTCACCAAACATCCTCCAAGTTCCGATCCTCTGTTTCGCGCTCCTCTCCCTCGGTGTGGTTATCTCCCCCGCGAACCCTCTCTCCACACGCCTCGAGCTCACGCGCCTCTTCCACCTCAGCAAACCTGCGATCGTCTTCGCAGTGACTTCAATCGCGGAAAAAACACGTGAGTTTCATGTCCGCACGGTCCTCCTCGACTCGCCCGAGTTCGACTCCCTCACTCGGACTAAGATTCAGCCTCTGAGTCCAATCGCCTCCACCACGCCGGTGACTCAGTCCGACGTGGCAGCGATTCTGTACTCTTCCGGCACGACGGGGAAGGTGAAGGGCGTTATGCTTACTCACCGCAACCTAACTGCGATAGCCGCGGGATACGACACGGTTCGCACGAAGCGCGCAGAACCCGCGGTGTTCCTCTATACGGTGCCGTATTTCCACGTGTACGGTTTCACGTTCAGCCTAGGGGCGATGGTTCTGTCGGAGACGGTGGTGATAATGGAGAGGTTCAGTTTGAGGGGAATGCTGAGCGCCGCGGAGAGGTTCCGAGCGACGCACATTACGGTGGTGCCGGTACTAGTGGTGGCTTTGACGAAAGACAGAGTGACAGACGAATACCAGTTGACATCGTTGGAAGGGATCGTGTGCGGTGGAGCTCCACTGAGGAAGGAAATCCACGAGGCTTTCAAAGCCAAGTTCCCCAAGGTCCTCATCATGCAGGGATACGGTTTAACTGAGTGTGCAGTTACCCGAACCGTTCCGGAGGAGGCTAATCAGGTGGGAACAGCAGGTAGACTGAAACCAGACATAGAAGCCAAAATTGTGAACCCACAAACAGGGAAACTCATGCTTCCTGGTGAAAAGGGAGAACTATGGATCAAAGGACCTTATGTTATGAAAGGTTATGTTGATGAGCCAGAAGCAACTTCAGCCACTTTGGTGAATGGGTGGTTAAGAACTGGAGATCTTTGTTATTTCGATAATGATGGTTTCTTGTATGTTGTAGATAGGTTAAAAGAGTTGATCAAATACAAGGGCTACCAGGTTGCACCGGCAGAGCTAGAAGAATTGCTCCTATCTCACCCAGACATAACTGATGCTGCTGTTATTCCATACCCTGATGATGAAGCAGGCGAAGTGCCCATGGCGTTTGTTGTAAGACAACCTCAAAGTTCTCTTGGCGCCGCAGAAGTTATTGATTTTGTTGCCAAACAGGTTACACCATACAAGAAAATAAGGCGTGTAGCATTTGTTGATTCCATACCCAAGAATGCTTCCGGAAAGATACTAAGAAAGGATCTAAGTAAAGTTGCACTCTCTAAGTTATAA	1635	0.5168	MEKMATTFPPVRDPRSGFNPASGTFHSLKPPLILPPPNATISAASYILFLRRNSHFPDSSTAVIDSTSGHRLSYEELIHRAENLAANLATVLKLSKSHTALVLSPNILQVPILCFALLSLGVVISPANPLSTRLELTRLFHLSKPAIVFAVTSIAEKTREFHVRTVLLDSPEFDSLTRTKIQPLSPIASTTPVTQSDVAAILYSSGTTGKVKGVMLTHRNLTAIAAGYDTVRTKRAEPAVFLYTVPYFHVYGFTFSLGAMVLSETVVIMERFSLRGMLSAAERFRATHITVVPVLVVALTKDRVTDEYQLTSLEGIVCGGAPLRKEIHEAFKAKFPKVLIMQGYGLTECAVTRTVPEEANQVGTAGRLKPDIEAKIVNPQTGKLMLPGEKGELWIKGPYVMKGYVDEPEATSATLVNGWLRTGDLCYFDNDGFLYVVDRLKELIKYKGYQVAPAELEELLLSHPDITDAAVIPYPDDEAGEVPMAFVVRQPQSSLGAAEVIDFVAKQVTPYKKIRRVAFVDSIPKNASGKILRKDLSKVALSKL*	545

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac4g00646	544	Pfam	AMP-binding enzyme	52	446	IPR000873	-
	Phac4g00646	544	FunFam	4-coumarate--CoA ligase 2	442	543	-	-
	Phac4g00646	544	ProSitePatterns	Putative AMP-binding domain signature.	201	212	IPR020845	-
	Phac4g00646	544	CDD	4CL	53	536	-	-
	Phac4g00646	544	Pfam	AMP-binding enzyme C-terminal domain	455	530	IPR025110	-
	Phac4g00646	544	Gene3D	-	442	542	IPR045851	-
	Phac4g00646	544	SUPERFAMILY	Acetyl-CoA synthetase-like	51	541	-	-
	Phac4g00646	544	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	21	538	-	-
	Phac4g00646	544	Gene3D	-	36	441	IPR042099	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac4g00646	Phac-Chr4	7827665	7836473	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac4g00646	13	541	Monolignol Biosynthesis Gene Families	AT5G63380	48.901	4.51e-179	514

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac4g00646	K01904		-	gmx:100784234	843.958

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