Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00643 ATGAATAAACCCTTCTTTTCCAATTGCAATATCAAACCTACAAAGATGAAGACTTTCTCCTCAATTCAACAACCCCACCATTTTCGCTGTACAAGATTTTTCTCTCACACTACCACAAGGACTCAACTTTCTTTTCCTACGAAGGTCTTCTTTTGCCAGGCAATATCTGGAACAGATGGGTCATTGCATTCAAATGTGGTGTCTCCTACACTATTAGCAGGAGAAAAGGAAGAAGCAAAGGCTGTGTTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCGATTGCTGCTAGAACCATCCACAAGTCAGATCTTTTTGTTGATCACCTTATCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTCACAGGGAGAGAGCTTACAACTATGGAGATCAGGGATGTGCTTTTCCCTTATCTTGAATCACTTTTTGAAGAGCATGGAGACATTCTAGTGGATGTGGTAGAAAACTATCCAAATCCACCTGTTAAGGATAAATCAGCTGTGCCAATTCCTCTTTCTAATCCAGTGTTAGACTCTAAGAAGCTTAAAGCTTTGTCCCGAGTGAGCGAGATAGACTGGAATGGTGCCATTCTTCGCCCTCATATTGCATATTTGATGGAACTTGGTATGGATATAGACCAGATTAGGAGTATCACCCGAAGATTCCCATCTTTTGCCTACTATAGCTTGGAAGGTAAAATTAAGCCGGTTGTCGAGTTTCTTCTTGAACTTGGAGTGCCAAAAGAGCGCATTCCCTCTATCCTCTCTAAAAGGCCTCAAATATGTGGAATTAGTCTATCAGAAAATCTTAAACCTACCATGAAGTTCTTTGAATCTTTGGGTGTTGACAAGAGGCAATGGCCGAAGGTGATCTATCGTTTTCCAGCCATGCTAACTTATAGCAGGCCTAAAGTAATGGAAAACATAGATTTTCTCCTTGAATTGGGACTCTCAGAAGAGAATATAGGTAAGATTTTAACTCGGTGCCCCAATATTGTCAGTTACAGTGTAGAGGACAATCTTCGACCCACAGCTAAGTACTTCCGTTCTTTGGGGGTAGATGTTAGCATTCTTCTATTCAGATGCCCGCAGAATTTTGGTCTTAGCATTGAGACCAATCTAAAGCCTGTAACAGAATTTTTCTTGGGAAGGGGATACACTTTGGAAGAAATTGGAACCATGATTTCAAGATATGGAGCCTTGTATACATTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACGGGTTACCCGAAGTCTGAGCTGGTCAAGTTCCCTCAATATTTTGGATACCGTTTTGAGGAAAGGATTAAACCTAGATTTGCAATTATGAAAAAATCAGGAGTGAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAGCAACTTTGACGAGGCCTTGAAAAAGAAAATGAAGAAAAAGCTAGAAGGTTAG 1461 0.4018 MNKPFFSNCNIKPTKMKTFSSIQQPHHFRCTRFFSHTTTRTQLSFPTKVFFCQAISGTDGSLHSNVVSPTLLAGEKEEAKAVLTLFLKKQGLSNAIAARTIHKSDLFVDHLISKLHSKHKSWYLTGRELTTMEIRDVLFPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPIPLSNPVLDSKKLKALSRVSEIDWNGAILRPHIAYLMELGMDIDQIRSITRRFPSFAYYSLEGKIKPVVEFLLELGVPKERIPSILSKRPQICGISLSENLKPTMKFFESLGVDKRQWPKVIYRFPAMLTYSRPKVMENIDFLLELGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVSILLFRCPQNFGLSIETNLKPVTEFFLGRGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYRFEERIKPRFAIMKKSGVKLLLNQVLSLSSSNFDEALKKKMKKKLEG* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00643 486 SMART mt_12 326 357 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 SMART mt_12 291 321 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 SMART mt_12 219 250 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 SMART mt_12 359 390 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 SMART mt_12 395 426 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 FunFam Transcription termination factor MTERF5 chloroplastic 262 482 - -
Phac4g00643 486 Coils Coil 477 486 - -
Phac4g00643 486 PANTHER CGI-12 PROTEIN-RELATED 177 477 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 Pfam mTERF 201 315 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 Pfam mTERF 307 472 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 Pfam mTERF 205 385 IPR003690 GO:0003690|GO:0006355
Phac4g00643 486 Gene3D Transcription termination factor 3, mitochondrial 265 485 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00643 Phac-Chr4 7775291 7778390 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phac4g00643 mTERF 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00643 K15032 - gmx:100781900 809.675