Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00642 ATGGAGATCAGGGATGTGCTTTTCCCTTATCTTGAATCACTTTTTGAAGAGCATGGAGACATTCTAGTGGATGTGGTAGAAAACTATCCAAATCCACCTGTTAAGGATAAATCAGCTGTGCCAATTCCTCTTTCTAATCCAGTGTTAGACTCTAAGAAGCTTAAAGCTTTGTCCCGAGTGAGCGAGATAGACTGGAATGGTGCCATTCTTCGCCCTCATATTGCATATTTGATGGAACTTGGTATGGATATAGACCAGATTAGGAGTATCACCCGAAGATTCCCATCTTTTGCCTACTATAGCTTGGAAGGTAAAATTAAGCCGGTTGTCGAGTTTCTTCTTGAACTTGGAGTGCCAAAAGAGCGCATTCCCTCTATCCTCTCTAAAAGGCCTCAAATATGTGGAATTAGTCTATCAGAAAATCTTAAACCTACCATGAAGTTCTTTGAATCTTTGGGTGTTGACAAGAGGCAATGGCCGAAGGTGATCTATCGTTTTCCAGCCATGCTAACTTATAGCAGGCCTAAAGTAATGGAAAACATAGATTTTCTCCTTGAATTGGGACTCTCAGAAGAGAATATAGGTAAGATTTTAACTCGGTGCCCCAATATTGTCAGTTACAGTGTAGAGGACAATCTTCGACCCACAGCTAAGTACTTCCGTTCTTTGGGGGTAGATGTTAGCATTCTTCTATTCAGATGCCCGCAGAATTTTGGTCTTAGCATTGAGACCAATCTAAAGCCTGTAACAGAATTTTTCTTGGGAAGGGGATACACTTTGGAAGAAATTGGAACCATGATTTCAAGATATGGAGCCTTGTATACATTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACGGGTTACCCGAAGTCTGAGCTGGTCAAGTTCCCTCAATATTTTGGATACCGTTTTGAGGAAAGGATTAAACCTAGATTTGCAATTATGAAAAAATCAGGAGTGAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAGCAACTTTGACGAGGCCTTGAAAAAGAAAATGAAGAAAAAGCTAGAAGGTTAG 1068 0.4036 MEIRDVLFPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPIPLSNPVLDSKKLKALSRVSEIDWNGAILRPHIAYLMELGMDIDQIRSITRRFPSFAYYSLEGKIKPVVEFLLELGVPKERIPSILSKRPQICGISLSENLKPTMKFFESLGVDKRQWPKVIYRFPAMLTYSRPKVMENIDFLLELGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVSILLFRCPQNFGLSIETNLKPVTEFFLGRGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYRFEERIKPRFAIMKKSGVKLLLNQVLSLSSSNFDEALKKKMKKKLEG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00642 355 FunFam Transcription termination factor MTERF5 chloroplastic 131 351 - -
Phac4g00642 355 Pfam mTERF 74 254 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 Pfam mTERF 176 341 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 PANTHER CGI-12 PROTEIN-RELATED 47 346 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 Gene3D Transcription termination factor 3, mitochondrial 131 354 IPR038538 -
Phac4g00642 355 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 SMART mt_12 195 226 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Phac4g00642 355 SMART mt_12 160 190 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00642 Phac-Chr4 7775291 7778390 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phac4g00642 mTERF 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00642 K15032 - gmx:100781900 624.009