Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00623 ATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCAAGTTCTCAGATGGGGTATCAGATTCAGGCCAACTCTGCAACCATGAATGCTTGCGGTGGCTTAAAGAAAAAAGAAGTTGAAATTCCCTATACTGAAAATTCTGAGCAACCAGAGAATTATTCTGATTCAAGGGATAGCAAACAAGAGTTCCCACGTAATAATAATCAGCAGGAAAATGGGTCAAAAGTAAAGACCAAAACTGTGGAAAATAATACAGAGAGTAGCAGTACAGATGAAGATAAAATCTTCAAGAAACCAGACAAGATTCTTCATTGTCCCCGATGCAACAGTTTAGACACTAAATTCTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCAGGTGGAACGATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCACATTATTGTATCTTGTGATGGAGTTCCAACTACAAACGACTCTTCTTGTCACCAACTTGTCACAACTCTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTGTTGAAATTTTGTCCAGATGCCCCTCCTCTTTGTGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAATCGAAGTGTTGATGAAAATACTGTCAATTGTGCAGAAAAAGGGGAGGAGGAAGTATCCCTCTGTGCATTAGCATCTATGACCAATGCTTGTACTGCAAGAAACACATTAACTGAACCTACTGCATCAAAACCTCTGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCAAGATTGGAACAATGTTGCTTCCACTGCATCAGTTCAACCCTCTTCACTACACATGTGTAACCCTTATAGTGCCGACCCCGCTTCAATGCAGTGGTGTCCTACACCAATGATGGCTGTTCCAACCATCTACCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGGGTGGACAACCTATGTGGGGTGGTGGAACAGGAGCAGTTTCAATGGGTTTCAACGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCGGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGATAACAATGTTTCAACAGATGAAGAAAAATCAGACATGTGTGTGTTGGTTCCAACGACTCTTAGAATTGATGATCCAAACGAGGCTGCAAAATGTCCTACATTTGCTTCATCAGGAATCAAGCCTGAAAACCAGCAATGTGTAGCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGAGCGTGTGTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTCCAAGAGGGCATGTAA 1467 0.4329 MSNKDPGIRLFGRKIPLPESQIPASSQMGYQIQANSATMNACGGLKKKEVEIPYTENSEQPENYSDSRDSKQEFPRNNNQQENGSKVKTKTVENNTESSSTDEDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGVPTTNDSSCHQLVTTLQSAAVFRSSTDNGTVLKFCPDAPPLCESMESMLNLKEQNRSVDENTVNCAEKGEEEVSLCALASMTNACTARNTLTEPTASKPLQCYPVPPWIFPWNQDWNNVASTASVQPSSLHMCNPYSADPASMQWCPTPMMAVPTIYPPSFPLQFVPGSYWGGQPMWGGGTGAVSMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNNVSTDEEKSDMCVLVPTTLRIDDPNEAAKCPTFASSGIKPENQQCVAEGTISKRAKPREGKERVLGVSQILEANPAAISRAHAFQEGM* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00623 488 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677|GO:0006355
Phac4g00623 488 MobiDBLite consensus disorder prediction 1 26 - -
Phac4g00623 488 Pfam Dof domain, zinc finger 111 168 IPR003851 GO:0003677|GO:0006355
Phac4g00623 488 MobiDBLite consensus disorder prediction 51 104 - -
Phac4g00623 488 MobiDBLite consensus disorder prediction 384 408 - -
Phac4g00623 488 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677|GO:0006355
Phac4g00623 488 PANTHER CYCLIC DOF FACTOR 2 3 487 IPR045174 GO:0003700|GO:0006355
Phac4g00623 488 MobiDBLite consensus disorder prediction 384 398 - -
Phac4g00623 488 MobiDBLite consensus disorder prediction 76 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00623 Phac-Chr4 7498720 7501854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00623 5 486 C2C2-Dof Transcription Factor Family AT5G39660 34.280 3.28e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phac4g00623 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00623 - - pvu:PHAVU_004G054000g 865.914