Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac4g00620 | ATGAGTACCTCACTACACTTCAGAAATAGTGGTTGTGGGTTCAGTGCTGAAATGGATGTTTTTCCTTCACCTCCTGTTCCTGTTCTTGCTCTCCAGTGTTCAAACACTTTGGGGTTCATGGGTGGAGGCACAGAAGCTGAAAGTTCTGACATGCCTTTTCAGAATTCGAACTTCTCAGTGATTCAACACCAGGAGGAGGAGGAGGAAGAAGAAGAATCTTTTGGGGTTGAGAACAAGAGCTTGTCTCTGAAACCTGGTGAAGAGCTTGAAGCTAATAGTTCTTCTGCCACAGGGAAAATTAGAGAAACTAAGCTTTGTGCTAGAGGACATTGGAGGCCAGTTGAAGATGACAAACTTAAAGAGCTTGTTGCACAATTTGGTCCTCAAAATTGGAACTCAATCGCAGAACATCTTCCAGGAAGATCAGGGAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCAAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCAGGTAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGAAGTCATGTGTCTACAAAAGGAGAAAGCCCACATTTCAGATCCTGCCACCAAAGGATTTGGATTTGACCTTGCCAATGAATGGAAGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTCCCTCTTCAGCCAAACCATCTCCTCTGCCTTTTCACAACCTCTGTCCTGCTCAGAATTTCCAAGCCTTTGGTGCTCTAATGGGTTTATCTGGAGAAAGCGGAACACTAGCAAGAGAAGTGGGTTTTGGTATGTATTTTGGTGCTTGGAAGGGTTCATTTGAGGCTGGACACATGGGAAGGCTAATTGGAATGGATCACTGCTATTATTCAGAGTCAAACTCATCAGAAGTTTCAGTATGTGAGTCAGTTGCCACCAACAGCACTACCAATCTCTCAATTTCTAGGGAAAATGAAAACATGGGTCATAAAAAGGCCAATATGATATTCATTGACTTTCTTGGAGTAGGAGCTGCATAA | 1146 | 0.4337 | MSTSLHFRNSGCGFSAEMDVFPSPPVPVLALQCSNTLGFMGGGTEAESSDMPFQNSNFSVIQHQEEEEEEEESFGVENKSLSLKPGEELEANSSSATGKIRETKLCARGHWRPVEDDKLKELVAQFGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYKRRKPTFQILPPKDLDLTLPMNGSSESTISSTIIDESASTGTNLSFTPSSAKPSPLPFHNLCPAQNFQAFGALMGLSGESGTLAREVGFGMYFGAWKGSFEAGHMGRLIGMDHCYYSESNSSEVSVCESVATNSTTNLSISRENENMGHKKANMIFIDFLGVGAA* | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac4g00620 | 381 | Pfam | Myb-like DNA-binding domain | 160 | 203 | IPR001005 | - | |
| Phac4g00620 | 381 | Pfam | Myb-like DNA-binding domain | 108 | 154 | IPR001005 | - | |
| Phac4g00620 | 381 | SMART | sant | 159 | 207 | IPR001005 | - | |
| Phac4g00620 | 381 | SMART | sant | 107 | 156 | IPR001005 | - | |
| Phac4g00620 | 381 | CDD | SANT | 111 | 152 | IPR001005 | - | |
| Phac4g00620 | 381 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 108 | 154 | IPR017930 | - | |
| Phac4g00620 | 381 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 155 | 209 | IPR017930 | - | |
| Phac4g00620 | 381 | CDD | SANT | 162 | 202 | IPR001005 | - | |
| Phac4g00620 | 381 | Gene3D | - | 161 | 220 | - | - | |
| Phac4g00620 | 381 | ProSiteProfiles | Myb-like domain profile. | 108 | 154 | IPR001005 | - | |
| Phac4g00620 | 381 | ProSiteProfiles | Myb-like domain profile. | 155 | 205 | IPR001005 | - | |
| Phac4g00620 | 381 | FunFam | MYB transcription factor | 108 | 159 | - | - | |
| Phac4g00620 | 381 | SUPERFAMILY | Homeodomain-like | 108 | 201 | IPR009057 | - | |
| Phac4g00620 | 381 | Gene3D | - | 108 | 159 | - | - | |
| Phac4g00620 | 381 | PANTHER | MYB PROTEIN-RELATED | 108 | 268 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac4g00620 | Phac-Chr4 | 7413380 | 7415914 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac4g00620 | 103 | 381 | MYB Transcription Factor Family | AT5G17800 | 43.509 | 1.39e-66 | 212 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Phac4g00620 | Myb_DNA-binding | 5.6e-16 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac4g00620 | K09422 | - | gmx:100791795 | 358.992 |