Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g00612 ATGGCGAGGAAGCGAAAACAGCCACCTCGTCCAGCGAAATCCGCAGAGCCCCCTCTCAAACAGCAACAACAACAGCCCCAATTGAATGTAGAAGCAGAGTATAAAGAAGAGGAACTATACGAAGAAGAAGAATTAGAAGAAGAAAGCGAAGAAATTGAAGAGGAATTAGCACCGAGCAATGAAACCTCCAAGGCCCCCTCCACGTCTTCCTCCTCTCCAAGCGACGACGAGGAGCCAATCCGGAACCTTCTAGAACCCCTCGGCAAGCATGAGATCGCGAAATTTCTCATGGAGGCCGCCTCCAAGCACCGCGACGTGGCGGAACGGATACGCCGCACCGCCGACGCCGATCCCGCGCACCGCAAGATCTTTGTACATGGCCTCGGCTGGGACACCACCGTCGAAACCCTCACCGACGCTTTCTCCTCCTACGGCGACATCGAGGACTGCAAGGCCGTTACGGACAAGGCCACCGGAAAGTCCAAGGGCTATGGCTTTGTCCTTTTCAAGACCCGTCGCGCTGCGCGGAACGCTCTTCGCCAGCCGCAGAAAAGGATCGGCAACCGCACTGCGGCTTGCCAGCTGGCGTCCGTGGGCCCAGTCCAGGCGACGACGGCGACGATTTCGATGGCGCCGGGGGCTTCAGATTTCTCGCAGAGGAAGATCTTCGTGAGCAATGTGAGTGCGGAATTGGACCCGCAGAGGCTTCTTTCGTTTTTTGCGCGGTTTGGGGAGATTGAGGAAGGACCTCTGGGGCTTGATAAGGTAACTGGGAAACCGAAGGGGTTCTGTTTGTTTGTTTATAAGAGTGTGGAGGGTGCAAAGCGGGCATTGGAGGGGCCACACAAGAAGTTTGAGGGGCATATTTTGCATTGCCAGAAGGCAATTGATGGTTCGAAGCAACAGCGAGTAGGGGTGGTGCAGGGTAGTTCTCATAGTGGTGGGTTTGTTGGTGTGGGGGCAGTGCCAATGACGGGGCACTTGATGGCTCCAGCCGGGCCAGCGGTAGGAGGAGGTGTAGCAGGGACGGCAGTGCAGTCAGTTAATCCGGCAGTTGGGCAGGCACTAACGGCATTGCTGGCATCTCGTGGTGCCGGGTTGCAATTGAGTGGGTTGTTGGGGATTGGGTCACCGGGGACGAACACTAGCAGTTATGTTGGACAAGGGAGTGTGAATCCTGGGGGTGTTGGTGTTGGGGGGTATGGGAATCAAGTAGGGCTGCCAAGTTCATATGCAAGCCAGCAGCAGGTGGGGTTAAGTGGATCTGGAAGAGTGCAGCAGTATCATGGTGTGGGACAGTATGGTGGCGTTGTGCCTTACACGGGCCACTAG 1332 0.5638 MARKRKQPPRPAKSAEPPLKQQQQQPQLNVEAEYKEEELYEEEELEEESEEIEEELAPSNETSKAPSTSSSSPSDDEEPIRNLLEPLGKHEIAKFLMEAASKHRDVAERIRRTADADPAHRKIFVHGLGWDTTVETLTDAFSSYGDIEDCKAVTDKATGKSKGYGFVLFKTRRAARNALRQPQKRIGNRTAACQLASVGPVQATTATISMAPGASDFSQRKIFVSNVSAELDPQRLLSFFARFGEIEEGPLGLDKVTGKPKGFCLFVYKSVEGAKRALEGPHKKFEGHILHCQKAIDGSKQQRVGVVQGSSHSGGFVGVGAVPMTGHLMAPAGPAVGGGVAGTAVQSVNPAVGQALTALLASRGAGLQLSGLLGIGSPGTNTSSYVGQGSVNPGGVGVGGYGNQVGLPSSYASQQQVGLSGSGRVQQYHGVGQYGGVVPYTGH* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g00612 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Phac4g00612 443 Gene3D - 210 320 IPR012677 -
Phac4g00612 443 SMART rrm1_1 122 194 IPR000504 GO:0003723
Phac4g00612 443 SMART rrm1_1 221 293 IPR000504 GO:0003723
Phac4g00612 443 Coils Coil 35 62 - -
Phac4g00612 443 PANTHER GEO13361P1-RELATED 107 385 - -
Phac4g00612 443 Gene3D - 20 206 IPR012677 -
Phac4g00612 443 SUPERFAMILY RNA-binding domain, RBD 113 200 IPR035979 GO:0003676
Phac4g00612 443 MobiDBLite consensus disorder prediction 35 56 - -
Phac4g00612 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 309 IPR000504 GO:0003723
Phac4g00612 443 MobiDBLite consensus disorder prediction 60 77 - -
Phac4g00612 443 MobiDBLite consensus disorder prediction 1 80 - -
Phac4g00612 443 SUPERFAMILY RNA-binding domain, RBD 214 315 IPR035979 GO:0003676
Phac4g00612 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 289 IPR000504 GO:0003723
Phac4g00612 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g00612 Phac-Chr4 7303916 7310601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g00612 216 295 C2H2 Transcription Factor Family AT2G19380 36.250 8.93e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g00612 K12741 - cpap:110817215 391.734